View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14882_low_18 (Length: 279)
Name: NF14882_low_18
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_low_18 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 146214 - 145955
Alignment:
| Q |
1 |
agagatatatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaagga |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
146214 |
agagagatatccttggcttgcaaactgtgagcgggagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaagga |
146115 |
T |
|
| Q |
101 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
146114 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
146015 |
T |
|
| Q |
201 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
146014 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
145955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 136163 - 135904
Alignment:
| Q |
1 |
agagatatatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaagga |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
136163 |
agagagatatccttggcttgcaaactgtgagcgggagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaagga |
136064 |
T |
|
| Q |
101 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
136063 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
135964 |
T |
|
| Q |
201 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135963 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
135904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 30)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 13170825 - 13171084
Alignment:
| Q |
1 |
agagatatatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaagga |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13170825 |
agagagatatccttggcttgcaaactgtgagcgggagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaagga |
13170924 |
T |
|
| Q |
101 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13170925 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
13171024 |
T |
|
| Q |
201 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13171025 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
13171084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 13343883 - 13344142
Alignment:
| Q |
1 |
agagatatatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaagga |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13343883 |
agagagatatccttggcttgcaaactgtgagcgggagagtttctctaagaacaccttcaagttcaatggtaaatgaatctgttatggttggtaggaagga |
13343982 |
T |
|
| Q |
101 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13343983 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
13344082 |
T |
|
| Q |
201 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13344083 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
13344142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 13332698 - 13332957
Alignment:
| Q |
1 |
agagatatatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaagga |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13332698 |
agagagatattcttggcttgcaaactgtgagcgcgagagtttctcttagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaagga |
13332797 |
T |
|
| Q |
101 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13332798 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtgttggtgtggttgcaattttgggtatgggcggtgttggcaaa |
13332897 |
T |
|
| Q |
201 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13332898 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
13332957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 13160780 - 13161033
Alignment:
| Q |
7 |
atatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataa |
106 |
Q |
| |
|
|||| |||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160780 |
atatccttggcttgcaaactgtgagcgcgagagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataa |
13160879 |
T |
|
| Q |
107 |
agagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccact |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160880 |
ggagagactcgttagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccact |
13160979 |
T |
|
| Q |
207 |
cttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160980 |
cttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
13161033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 13289459 - 13289718
Alignment:
| Q |
1 |
agagatatatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaagga |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||| | |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13289459 |
agagagatatccttggcttgcaaactgtgagagggagagtttctcttagaacgccttcaagttcaatggtaaataaatctgttatggttggtaggaagga |
13289558 |
T |
|
| Q |
101 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13289559 |
tgataaagagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggtcgcaattttgggtatgggcggtgttggcaaa |
13289658 |
T |
|
| Q |
201 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13289659 |
accactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaa |
13289718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 259
Target Start/End: Original strand, 10126774 - 10126980
Alignment:
| Q |
53 |
gccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcactaccaat |
152 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| | | || | |||||| ||||| | || | ||| || || |
|
|
| T |
10126774 |
gccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccat |
10126873 |
T |
|
| Q |
153 |
agtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttg |
252 |
Q |
| |
|
| || ||| ||||| |||||||||||||| ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||| |
|
|
| T |
10126874 |
aataatataggtgttgttgcaattttgggcatgggaggtttgggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
10126973 |
T |
|
| Q |
253 |
atctgaa |
259 |
Q |
| |
|
|| |||| |
|
|
| T |
10126974 |
atttgaa |
10126980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 10527151 - 10527386
Alignment:
| Q |
23 |
aactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagt |
122 |
Q |
| |
|
|||||| ||||| ||| |||||| ||||| |||||||||||| |||||||||||||||| || || |||||||| ||||||||||| ||||||| | | |
|
|
| T |
10527151 |
aactgtaagtgatagattttctcgtagaaccccttcaagttcagtggtaaatgaatctgtcattgtgggtaggaatgatgataaaga-tgactcatcaat |
10527249 |
T |
|
| Q |
123 |
atgttgatatctgacagtggcac---taccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttc |
219 |
Q |
| |
|
|||||| |||| ||| ||||||| || |||| || | | ||||| |||||||| ||||||||||| ||||| || ||||| || ||||| |||||| |
|
|
| T |
10527250 |
atgttggtatcagactgtggcaccagtagaaataataatttaggtgttgttgcaatcttgggtatgggaggtgtcggtaaaacaacccttgcacaacttg |
10527349 |
T |
|
| Q |
220 |
tttataatgataaagaagttcaagaccattttgatct |
256 |
Q |
| |
|
|||| |||||| || | ||| || ||||||||||||| |
|
|
| T |
10527350 |
tttacaatgatgaaaaggttgaacaccattttgatct |
10527386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 259
Target Start/End: Original strand, 10663372 - 10663578
Alignment:
| Q |
53 |
gccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcactaccaat |
152 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||| |||||||||| ||| ||||||| | | || | |||||| |||| | || | ||| ||| || |
|
|
| T |
10663372 |
gccttcaagttcagtggtaaatgaatctctcatggtgggtaggaagggtgacaaagagacaataatgaacatgttgctatcacagagagacacaacccat |
10663471 |
T |
|
| Q |
153 |
agtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttg |
252 |
Q |
| |
|
| || ||| ||||| |||||||||||||| ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||| |
|
|
| T |
10663472 |
aataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
10663571 |
T |
|
| Q |
253 |
atctgaa |
259 |
Q |
| |
|
|| |||| |
|
|
| T |
10663572 |
atttgaa |
10663578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 10260544 - 10260744
Alignment:
| Q |
53 |
gccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcactaccaat |
152 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| | | || | |||||| |||| | || | || ||||| |
|
|
| T |
10260544 |
gccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcacagagagaaacaaccaac |
10260643 |
T |
|
| Q |
153 |
agtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttg |
252 |
Q |
| |
|
| || ||| ||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||||||||||||||| | ||||||| |
|
|
| T |
10260644 |
aataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttg |
10260743 |
T |
|
| Q |
253 |
a |
253 |
Q |
| |
|
| |
|
|
| T |
10260744 |
a |
10260744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 10088631 - 10088842
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| | | || | |||||| | || | || | || | |
|
|
| T |
10088631 |
agaactccttcaagttcggtggtaaatgaatctgtcatggtgggtaggaaggatgataaagagacaataatgaacatgttgctttcaaagagagaaacaa |
10088730 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
|| | | || ||| ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
10088731 |
ccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacacca |
10088830 |
T |
|
| Q |
248 |
ttttgatctgaa |
259 |
Q |
| |
|
||||||| |||| |
|
|
| T |
10088831 |
ttttgatttgaa |
10088842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 10195514 - 10195725
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||| | | || | |||||| | || | || | || | |
|
|
| T |
10195514 |
agaactccttcaagttcagtggtaaatgaatctgtcatggtgggtagaaaggatgataaagagacaataatgaacatgttgctttcaaagagagaaacaa |
10195613 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
|| | | || ||| ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| |||| |
|
|
| T |
10195614 |
ccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacacca |
10195713 |
T |
|
| Q |
248 |
ttttgatctgaa |
259 |
Q |
| |
|
||||||| |||| |
|
|
| T |
10195714 |
ttttgatttgaa |
10195725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 53 - 259
Target Start/End: Original strand, 10031849 - 10032055
Alignment:
| Q |
53 |
gccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcactaccaat |
152 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||| |||||||||||||| ||||||| | | || | |||||| |||| | || | | | || || |
|
|
| T |
10031849 |
gccttcaagttcagtggtaaatgaatctctcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcacagagagacgcatcccat |
10031948 |
T |
|
| Q |
153 |
agtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttg |
252 |
Q |
| |
|
| || ||| ||||| |||||||||||||| ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||| |
|
|
| T |
10031949 |
aataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
10032048 |
T |
|
| Q |
253 |
atctgaa |
259 |
Q |
| |
|
|| |||| |
|
|
| T |
10032049 |
atttgaa |
10032055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 254
Target Start/End: Original strand, 10184088 - 10184289
Alignment:
| Q |
53 |
gccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcactaccaat |
152 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| | | || | |||||| | || | || | ||| ||| || |
|
|
| T |
10184088 |
gccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctgtcacagagagacacaacccat |
10184187 |
T |
|
| Q |
153 |
agtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttg |
252 |
Q |
| |
|
| | ||| ||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||||||||||||||| | ||||||| |
|
|
| T |
10184188 |
aatgctataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttg |
10184287 |
T |
|
| Q |
253 |
at |
254 |
Q |
| |
|
|| |
|
|
| T |
10184288 |
at |
10184289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 8861127 - 8861335
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| |||||||||||| | || ||||||||||| ||||||||||| || ||||||||||||| | | || | |||||| |||| || || |||||| |
|
|
| T |
8861127 |
agaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacagtaatgaacatgttgctatcagagagcagcacta |
8861226 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
|||| | ||| ||||| ||||||||||| |||||||| ||||| || ||||| || ||||| |||||| |||| |||||| || |||||||||| || |
|
|
| T |
8861227 |
ggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaatgatgaaaaagttcaagagca |
8861326 |
T |
|
| Q |
248 |
ttttgatct |
256 |
Q |
| |
|
|||||||| |
|
|
| T |
8861327 |
ctttgatct |
8861335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 10889147 - 10889355
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| |||||||||||| | || ||||||||||| ||||||||||| || ||||||||||||| | | || | |||||| |||| || || |||||| |
|
|
| T |
10889147 |
agaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgctatcagagagcagcacta |
10889246 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
|||| | ||| ||||| ||||||||||| |||||||| ||||| || ||||| || ||||| |||||| |||| |||||| || |||||||||| || |
|
|
| T |
10889247 |
ggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaatgatgaaaaagttcaagagca |
10889346 |
T |
|
| Q |
248 |
ttttgatct |
256 |
Q |
| |
|
|||||||| |
|
|
| T |
10889347 |
ctttgatct |
10889355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 259
Target Start/End: Complemental strand, 10364026 - 10363815
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| | | || | |||||| | || | || | || | |
|
|
| T |
10364026 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctttcaaagagagaaacaa |
10363927 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
|| | | || ||| ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | || |
|
|
| T |
10363926 |
ccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaaca |
10363827 |
T |
|
| Q |
248 |
ttttgatctgaa |
259 |
Q |
| |
|
||||||| |||| |
|
|
| T |
10363826 |
ttttgatttgaa |
10363815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 9838661 - 9838908
Alignment:
| Q |
7 |
atatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataa |
106 |
Q |
| |
|
|||| ||||| ||||||||| |||| ||| |||||| ||||| ||||| |||||| ||||||||||||||| |||| |||||||||| ||| || |
|
|
| T |
9838661 |
atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa |
9838760 |
T |
|
| Q |
107 |
agagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccact |
206 |
Q |
| |
|
||||| | | || | |||||| ||||| | || | ||| ||| ||| | ||| ||||| |||||||||||||| ||||| ||| | || ||||| || |
|
|
| T |
9838761 |
agagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacc |
9838860 |
T |
|
| Q |
207 |
cttgcccaacttctttataatgataaagaagttcaagaccattttgat |
254 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||| | ||||||||| |
|
|
| T |
9838861 |
cttgcccaacttgtttacaatgatgaagaagttcaacaacattttgat |
9838908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 9849539 - 9849786
Alignment:
| Q |
7 |
atatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataa |
106 |
Q |
| |
|
|||| ||||| ||||||||| |||| ||| |||||| ||||| ||||| |||||| ||||||||||||||| |||| |||||||||| ||| || |
|
|
| T |
9849539 |
atatacttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaa |
9849638 |
T |
|
| Q |
107 |
agagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccact |
206 |
Q |
| |
|
||||| | | || | |||||| ||||| | || | ||| ||| ||| | ||| ||||| |||||||||||||| ||||| ||| | || ||||| || |
|
|
| T |
9849639 |
agagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacc |
9849738 |
T |
|
| Q |
207 |
cttgcccaacttctttataatgataaagaagttcaagaccattttgat |
254 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||| | ||||||||| |
|
|
| T |
9849739 |
cttgcccaacttgtttacaatgatgaagaagttcaacaacattttgat |
9849786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 254
Target Start/End: Complemental strand, 11160245 - 11160039
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| |||||||||||| | || |||| |||||| ||||||||||| || ||||||||||||| | | || | |||||| |||| || ||| ||||| |
|
|
| T |
11160245 |
agaaccccttcaagttcagtagttaatgcatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgctatcagagagtagcactg |
11160146 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
||||| | ||| || || ||||||||||| |||||||| ||||| || ||||| || ||||| |||||| |||| ||| || || |||||||||| || |
|
|
| T |
11160145 |
gcaataacaatataggcgttgttgcaattttaggtatgggaggtgtcggtaaaacgacacttgcacaacttgtttacaataatgaaaaagttcaagatca |
11160046 |
T |
|
| Q |
248 |
ttttgat |
254 |
Q |
| |
|
||||||| |
|
|
| T |
11160045 |
ttttgat |
11160039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 259
Target Start/End: Complemental strand, 10376073 - 10375862
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| | | || | |||||| |||| || | | ||| |
|
|
| T |
10376073 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagacactataatgaacatgttgctatcagagacagacacat |
10375974 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
| ||| || ||| ||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | || |
|
|
| T |
10375973 |
cgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaaca |
10375874 |
T |
|
| Q |
248 |
ttttgatctgaa |
259 |
Q |
| |
|
||||||| |||| |
|
|
| T |
10375873 |
ttttgatttgaa |
10375862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 259
Target Start/End: Original strand, 11769075 - 11769286
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| || || ||||||||| |||| ||||||| | | || | |||||| |||| | || | ||| | |
|
|
| T |
11769075 |
agaacaccttcaagttcagtggtaaatgaatctgtcatagtgggtaggaagaatgacaaagagacaataatgaacatgttgctatcacagagagacacaa |
11769174 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
| ||| || ||| ||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| | || |||||||||||||||||| | | |
|
|
| T |
11769175 |
tccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgctcaacttgtctacaatgataaagaagttcaacaata |
11769274 |
T |
|
| Q |
248 |
ttttgatctgaa |
259 |
Q |
| |
|
||||||| |||| |
|
|
| T |
11769275 |
ttttgatttgaa |
11769286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 23 - 133
Target Start/End: Original strand, 10500369 - 10500479
Alignment:
| Q |
23 |
aactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagt |
122 |
Q |
| |
|
|||||| |||| ||| |||||| ||||| |||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||| |||||| | | | |
|
|
| T |
10500369 |
aactgtaagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaatgatgataaagatagactcgtcaat |
10500468 |
T |
|
| Q |
123 |
atgttgatatc |
133 |
Q |
| |
|
|||||| |||| |
|
|
| T |
10500469 |
atgttggtatc |
10500479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 259
Target Start/End: Complemental strand, 10434266 - 10434061
Alignment:
| Q |
54 |
ccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcactaccaata |
153 |
Q |
| |
|
||||||||||| |||| ||||||||| | |||||||| ||||||||||| ||||||| | | || | |||||| |||| | || ||| || ||| |
|
|
| T |
10434266 |
ccttcaagttctgtggtcaatgaatctttcatggttggaaggaaggatgacaaagagacaataatgaacatgttgctatcacagagaaacacaactcata |
10434167 |
T |
|
| Q |
154 |
gtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttga |
253 |
Q |
| |
|
|| || ||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| |||||||||| |
|
|
| T |
10434166 |
ataagataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattttga |
10434067 |
T |
|
| Q |
254 |
tctgaa |
259 |
Q |
| |
|
| |||| |
|
|
| T |
10434066 |
tttgaa |
10434061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 10580406 - 10580647
Alignment:
| Q |
12 |
cttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagaga |
111 |
Q |
| |
|
||||| ||||||||| ||||| ||| |||||| |||| ||||||||||| || | || |||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
10580406 |
cttggtttgcaaactaagagtgctagagtttctcatggaactccttcaagttctgtgtttaacgaatctgtcatggtgggtaggaaggatgacaaagaga |
10580505 |
T |
|
| Q |
112 |
gactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgc |
211 |
Q |
| |
|
| | || | |||||| |||| | || ||| | | ||| || ||| ||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |
|
|
| T |
10580506 |
caataatgaacatgttgctatcacagagaaacacaatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgc |
10580605 |
T |
|
| Q |
212 |
ccaacttctttataatgataaagaagttcaagaccattttga |
253 |
Q |
| |
|
||||||| |||| |||||||||||||||||| | |||||||| |
|
|
| T |
10580606 |
ccaacttgtttacaatgataaagaagttcaacaacattttga |
10580647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 11782234 - 11782149
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatc |
133 |
Q |
| |
|
||||| |||||||||||| || ||||| |||||| |||| |||||||| ||||||||||| |||||||| | |||| ||||||| |
|
|
| T |
11782234 |
agaaccccttcaagttcagtgctaaatcaatctgacgtggtgggtaggaatgatgataaagatagactcatcaatatgctgatatc |
11782149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 10077224 - 10077316
Alignment:
| Q |
162 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgat |
254 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || |||||||||||| |||| |||||| | |||||| | ||||||||||| |
|
|
| T |
10077224 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgattataaagttcgataccattttgat |
10077316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 256
Target Start/End: Complemental strand, 11131254 - 11131046
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| ||||| ||||| |||| |||||||| | ||||||||||| |||||||| ||||||| | | | | |||||| |||| | || |||||| |
|
|
| T |
11131254 |
agaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaagagacaataacgaacatgttgctatcaaagagcagcacta |
11131155 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
||||| | ||| ||||| ||||||||||| |||||||| ||||| || ||||| || ||||| ||| || ||| |||||| || |||||||||| || |
|
|
| T |
11131154 |
gcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaaca |
11131055 |
T |
|
| Q |
248 |
ttttgatct |
256 |
Q |
| |
|
|||||||| |
|
|
| T |
11131054 |
ctttgatct |
11131046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 256
Target Start/End: Complemental strand, 11149082 - 11148874
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| ||||| ||||| |||| |||||||| | ||||||||||| |||||||| ||||||| | | | | |||||| |||| | || |||||| |
|
|
| T |
11149082 |
agaacaccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaagagataataacgaacatgttgctatcaaagagcagcacta |
11148983 |
T |
|
| Q |
148 |
ccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagacca |
247 |
Q |
| |
|
||||| | ||| ||||| ||||||||||| |||||||| ||||| || ||||| || ||||| ||| || ||| |||||| || |||||||||| || |
|
|
| T |
11148982 |
gcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaaca |
11148883 |
T |
|
| Q |
248 |
ttttgatct |
256 |
Q |
| |
|
|||||||| |
|
|
| T |
11148882 |
ctttgatct |
11148874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 10077100 - 10077155
Alignment:
| Q |
38 |
aatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggta |
93 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
10077100 |
aatttctcgtagaacaccttcaagttcagtggtaaatgaatctgagatggttggta |
10077155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 10517310 - 10517387
Alignment:
| Q |
56 |
ttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatc |
133 |
Q |
| |
|
||||||||| || |||||||||||| |||| |||||||| ||||||||||| |||||||| | ||||||| |||| |
|
|
| T |
10517310 |
ttcaagttcggtgctaaatgaatctgacgtggtgggtaggaatgatgataaagatagactcatcaatatgttggtatc |
10517387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 26906697 - 26906949
Alignment:
| Q |
7 |
atatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataa |
106 |
Q |
| |
|
|||| ||||| ||||||||| |||| ||| |||||| ||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
26906697 |
atatccttggtttgcaaactaaaagtgctagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaa |
26906796 |
T |
|
| Q |
107 |
agagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccact |
206 |
Q |
| |
|
||||| | | || | ||||||| |||| || || | ||| ||| ||| || ||| ||||| |||||||||||||| ||||| ||| | || ||||| || |
|
|
| T |
26906797 |
agagacaataatgaatatgttgctatcagagagagacacaacccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacc |
26906896 |
T |
|
| Q |
207 |
cttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaa |
259 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
26906897 |
cttgcccaacttctttacaatgataaagaagttcaacggcattttgatttgaa |
26906949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 31680002 - 31679755
Alignment:
| Q |
7 |
atatgcttggcttgcaaactgtgagtgagagaatttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataa |
106 |
Q |
| |
|
|||| ||||| ||||||||||| |||| || ||| ||| ||||| |||||||||||| | ||| || ||||| | ||||||||||||||| |||||| |
|
|
| T |
31680002 |
atatccttgggttgcaaactgtaagtggtagggtttttcttagaacaccttcaagttcactagtagatcaatctttcatggttggtaggaagagtgataa |
31679903 |
T |
|
| Q |
107 |
agagagactcattagtatgttgatatctgacagtggcactaccaatagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccact |
206 |
Q |
| |
|
||||| ||| | || ||||||| |||| || | ||||| |||| || |||| ||| ||| ||||||| || ||||| ||||| || ||||| | |
|
|
| T |
31679902 |
agagaaactaactaatatgttgctatcagatgttagcactgtcaatgataatattaatgttgtttcaattttcggcatgggaggtgtcggtaaaacagcc |
31679803 |
T |
|
| Q |
207 |
cttgcccaacttctttataatgataaagaagttcaagaccattttgat |
254 |
Q |
| |
|
|| || ||||||||||| ||||||||||| |||||||| | ||||||| |
|
|
| T |
31679802 |
ctagctcaacttctttacaatgataaagatgttcaagaacgttttgat |
31679755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 50036 - 49981
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatga |
103 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
50036 |
agaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga |
49981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 11484855 - 11485066
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatctgacagtggcacta |
147 |
Q |
| |
|
||||| || ||||||||| |||| ||||||||||||||||| || ||||| || |||||||| |||||| || | ||||| |||| ||| |||| || | |
|
|
| T |
11484855 |
agaacaccatcaagttcagtggtgaatgaatctgttatggtgggaaggaatgaagataaagatagactccttgatgtgttggtatcagactgtggtacca |
11484954 |
T |
|
| Q |
148 |
cca---atagtagtattggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaaga |
244 |
Q |
| |
|
|| ||| || | | ||||| ||||||||||||| |||||| || || || ||||| || ||||| |||||| |||| || ||| || ||||| || | |
|
|
| T |
11484955 |
gcagatataataatttaggtgttgttgcaattttggttatgggaggcgtcggtaaaacgacccttgcacaacttgtttacaacgatgaaaaagttgaaca |
11485054 |
T |
|
| Q |
245 |
ccattttgatct |
256 |
Q |
| |
|
||||||||||| |
|
|
| T |
11485055 |
gcattttgatct |
11485066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 44957937 - 44957867
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagagagactcat |
118 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||| ||||||| || ||||| |||||||||| |||||||| |
|
|
| T |
44957937 |
agaacaccttcaagttcaggggttaatgaatctattatggtgggcaggaaacatgataaagatagactcat |
44957867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 29836511 - 29836575
Alignment:
| Q |
69 |
gtaaatgaatctgttatggttggtaggaaggatgataaagagagactcattagtatgttgatatc |
133 |
Q |
| |
|
|||||||||| ||| | ||||||||||||||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
29836511 |
gtaaatgaatatgtcacggttggtaggaaggatgataaagaggaactagttaatatgttgatatc |
29836575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 17853175 - 17853116
Alignment:
| Q |
48 |
agaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaa |
107 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||| ||||| || ||||| ||||||||| |
|
|
| T |
17853175 |
agaaccccttcaagttccgtggtaaatgaatctgtcatggtaggaaggaatgatgataaa |
17853116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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