View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14882_low_2 (Length: 595)
Name: NF14882_low_2
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Complemental strand, 28587998 - 28587404
Alignment:
| Q |
1 |
tttttagtttacacctaggattatgtgtagtatatatattaacatagataaaaacatggttcctacagtgtaagaaatgatctgcctacattgtaactaa |
100 |
Q |
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| T |
28587998 |
tttttagcttacacctaggattatgtgtaatatatatattaacatagataaaaacatggttcctacagtgtaagaaatgatctgcctacattgtaactaa |
28587899 |
T |
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| Q |
101 |
aaggttaggctcattaagcggtatgaacttcaaaccggacaaagttgattagttacgccgcaaactacacatcgctgtaaatattagttggtgcggtcgc |
200 |
Q |
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| T |
28587898 |
aaggttaggctcattaagcggtatgaacttcaaaccagacaaagttgattagttacgccgcaaactatacatcgctgtaaatat-agttggtgcggccgc |
28587800 |
T |
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| Q |
201 |
aattgtggttagaa-gttcttcaaagacttgtataccttttatattgcagttgtaattgtagttgttgaccgcaatttagaaccatgctcataagactaa |
299 |
Q |
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| T |
28587799 |
aattgtggttacaatgttctgcaaagacttgtataccttttatattgcagttgtaattgtagttgttgaccgcaatttagaaccatgctcataagactaa |
28587700 |
T |
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| Q |
300 |
tttggttaggactttattaattgcattgcaaggtattttgaaaccatacgtagagttcagctcaagttatctttctagtgaatgagagatgtggaattgg |
399 |
Q |
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| T |
28587699 |
tttggttgggactttattaattgcattgcaaggtattttgaaaccatacgtagacttcagctcaagttatctttctagtgaatgagagatgtggaattgg |
28587600 |
T |
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| Q |
400 |
atcctctagagttgtgatttaacagtaaacctcatgtagttaaatctgatggctaagatttatttaattggatttatgtttttacaaaatacctaaatac |
499 |
Q |
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| T |
28587599 |
atcctctagagttgtgatttaacagtaaacctcatgtagttaaatctgatggctaagatttatttaattggatttatgtttttacaaaatacctaaatac |
28587500 |
T |
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| Q |
500 |
aatgttttttatcactcagcatatttgtattctctaatatctcaggtttcccattatgctaaggaattggaggagatgaaagatgtaggaaagcaa |
595 |
Q |
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| T |
28587499 |
aatgttttttatcactcagcatatttgtattctctaatatctcaggtttcccattatgctaaggaattggaggagatgaaagatgtaggaaagcaa |
28587404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 26543590 - 26543541
Alignment:
| Q |
238 |
tttatattgcagttgtaattgtagttgttgaccgcaatttagaaccatgc |
287 |
Q |
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| T |
26543590 |
tttatattgcggttgcaattgtagttgcagaccgcaatttagaactatgc |
26543541 |
T |
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