View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14882_low_3 (Length: 580)
Name: NF14882_low_3
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 12 - 567
Target Start/End: Complemental strand, 37032715 - 37032163
Alignment:
| Q |
12 |
cataggttaaaattcaagcttgcactctgggctgatatttgagatcataggtttagataccataactacgtatacgtgaatttattaataaagacaattc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37032715 |
cataggttaaaattcaagcttgcactctgggctgatatttgagatcataggtttagataccataactacgtatacgtgaatttattaataaagacaattc |
37032616 |
T |
|
| Q |
112 |
aactttacgtaggtttagacttattatttgcatgtatgctctctcatatcgaagacgttgactacttctatattctttgaatgtccattttcatttttca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37032615 |
aactttacgtaggtttagacttattatttgcatgtatgctctctcatatcgaagacgttgactacttctatattctttgaatgtccattttcatttttca |
37032516 |
T |
|
| Q |
212 |
ttttggataataatggcttattatccaacagttattgatggcttgctgcacatttaagtaacaaatttaagcatcgtttcctttatcataaaaattatta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37032515 |
ttttggataataatggcttattatccaacagttattgatggcttgctgcacatttaagtaacaaatttaagcatcgtttcctttatcataaaaattatta |
37032416 |
T |
|
| Q |
312 |
attcnnnnnnnnnnnnnnccagttatattgaccctacatggaatctagaaaaaatttaagctttgaatttaaaagctgtagaattgaagtttaaagcttt |
411 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37032415 |
att--tttttttttttttccagttatattga-cctacatggaatctagaaaaaatttaagctttgaatttaaaagctgtagaattgaagtttaaagcttt |
37032319 |
T |
|
| Q |
412 |
ggaccacatatatacatgttatagtctggtttgtaccatcttggtctaacataatgttagaagaacaatgctatgtagtactcattcacctactttaaat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37032318 |
ggaccacatatatacatgttatagtctggtttgtaccatcttggtctaacataatgttagaagaacaatgctatgtagtactcattcacctactttaaat |
37032219 |
T |
|
| Q |
512 |
ttatgtataactcccaaaacagatcatatttaggtgtatgtcccgcaattatttga |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37032218 |
ttatgtataactcccaaaacagatcatatttaggtgtatgtcccgcaattatttga |
37032163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University