View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14882_low_5 (Length: 521)

Name: NF14882_low_5
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14882_low_5
NF14882_low_5
[»] scaffold0010 (1 HSPs)
scaffold0010 (16-501)||(251420-251905)
[»] chr4 (3 HSPs)
chr4 (41-93)||(41501984-41502036)
chr4 (123-154)||(29423341-29423372)
chr4 (104-154)||(14110129-14110179)
[»] chr7 (2 HSPs)
chr7 (45-91)||(39052724-39052770)
chr7 (101-159)||(37059973-37060031)
[»] chr6 (2 HSPs)
chr6 (102-154)||(17593469-17593521)
chr6 (102-154)||(17699995-17700047)
[»] chr5 (2 HSPs)
chr5 (41-93)||(29635498-29635550)
chr5 (102-159)||(16214970-16215027)
[»] chr1 (3 HSPs)
chr1 (50-94)||(33054299-33054343)
chr1 (102-157)||(27811331-27811386)
chr1 (44-94)||(22580468-22580518)
[»] chr8 (2 HSPs)
chr8 (104-173)||(4809452-4809521)
chr8 (45-93)||(3695239-3695287)
[»] chr2 (2 HSPs)
chr2 (102-154)||(29848672-29848724)
chr2 (105-154)||(28043443-28043492)


Alignment Details
Target: scaffold0010 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 251420 - 251905
Alignment:
Q  16 catagggatatatgtgnnnnnnngaaattttgagggttggcaagtgcatcccctcggcactatgtgcctccgccactgaccgacaagtaccgaagctcta 115  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  251420 catagggatatatgtgaaaaaaagaaattttgagggttggcaagtgcatcccctcggcactatgtgcctctgccactgaccgacacgtaccaaagctcta 251519  T
Q  116 tactcctatacgtactgaattcttctcatgtcgcgtaccacgaatctgaacgagtaccgtgtaccaacccaaattgcgtattatgtaactatggtatgaa 215  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  251520 tactccaatacgtaccgaattcttctcatgtcgcgtaccacgaatctgaacgagtaccatgtaccaacccaaattgcgtattatgtaactatggtatgaa 251619  T
Q  216 ctattgtctcatcctaaagctccaacatctctttgcaatagtttcctcgcttatataaatataaaactattcgtactgaagaagttgttggaaagaatac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  251620 ctattgtctcatcctaaagctccaacatctctttgcaatagtttcctcgcttatataaatataaaactattcttaccgaagaagttgttggaaagaatac 251719  T
Q  316 actcgttgtgaaatgaccaaggtcgaaggtaccacattcatggtcaaaactcaaaacagaaaatatgtcatcaaaattcaaaagatgaccaaatagaatt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  251720 actcgttgtgaaatgaccaaggtcgaaggtaccacattcatggtcaaaactcaaaacagaaaatatgtcatcaaaattcaaaagatgaccaaatagaatt 251819  T
Q  416 tggttcatagttgaatgctaacggacttaatgtccatcacaaactacatcaaacagagagaaccataatatggaaaatgttattat 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  251820 tggttcatagttgaatgctaacggacttaatgtccatcacaaactacattaaacagagagaaccataatatggaaaatgttattat 251905  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 41501984 - 41502036
Alignment:
Q  41 aattttgagggttggcaagtgcatcccctcggcactatgtgcctccgccactg 93  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41501984 aattttgagggttggcaagtgcatcccctcagcactatgtgcctccgccactg 41502036  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 154
Target Start/End: Original strand, 29423341 - 29423372
Alignment:
Q  123 atacgtactgaattcttctcatgtcgcgtacc 154  Q
    ||||||||||||||||||||||||||||||||    
T  29423341 atacgtactgaattcttctcatgtcgcgtacc 29423372  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 14110129 - 14110179
Alignment:
Q  104 accgaagctctatactcctatacgtactgaattcttctcatgtcgcgtacc 154  Q
    ||||||||||||||| ||| ||| ||| |||||||||||||| ||||||||    
T  14110129 accgaagctctatacccctgtacataccgaattcttctcatgccgcgtacc 14110179  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 39052724 - 39052770
Alignment:
Q  45 ttgagggttggcaagtgcatcccctcggcactatgtgcctccgccac 91  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  39052724 ttgagggttggcaagtgcatcccctcagcactatgtgcctccgccac 39052770  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 37059973 - 37060031
Alignment:
Q  101 agtaccgaagctctatactcctatacgtactgaattcttctcatgtcgcgtaccacgaa 159  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||| ||| ||| ||||    
T  37059973 agtactgaagctctatactcccatacgtaccgaattcttctcatgtagcgaaccgcgaa 37060031  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 17593521 - 17593469
Alignment:
Q  102 gtaccgaagctctatactcctatacgtactgaattcttctcatgtcgcgtacc 154  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||| |||||    
T  17593521 gtaccgaaactctatactcctatacgtacctaattcttctcatgtcgggtacc 17593469  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 17700047 - 17699995
Alignment:
Q  102 gtaccgaagctctatactcctatacgtactgaattcttctcatgtcgcgtacc 154  Q
    |||| ||| ||||||||||||||||||||  |||||||||||||||| |||||    
T  17700047 gtactgaaactctatactcctatacgtacctaattcttctcatgtcgggtacc 17699995  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 29635550 - 29635498
Alignment:
Q  41 aattttgagggttggcaagtgcatcccctcggcactatgtgcctccgccactg 93  Q
    |||||||| |||||||||||||||||||||  |||||||| ||||||||||||    
T  29635550 aattttgaaggttggcaagtgcatcccctcatcactatgtacctccgccactg 29635498  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 16214970 - 16215027
Alignment:
Q  102 gtaccgaagctctatactcctatacgtactgaattcttctcatgtcgcgtaccacgaa 159  Q
    |||||||| |||||||  ||||| |||||  |||||||||||||||||||||| ||||    
T  16214970 gtaccgaaactctatatccctatgcgtaccaaattcttctcatgtcgcgtaccgcgaa 16215027  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 33054299 - 33054343
Alignment:
Q  50 ggttggcaagtgcatcccctcggcactatgtgcctccgccactga 94  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  33054299 ggttggcaagtgcatcccctcagtactatgtgcctccgccactga 33054343  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 27811331 - 27811386
Alignment:
Q  102 gtaccgaagctctatactcctatacgtactgaattcttctcatgtcgcgtaccacg 157  Q
    ||||||||||||||||| || | ||||||  |||||||||||||||||||||||||    
T  27811331 gtaccgaagctctatacccccaaacgtacccaattcttctcatgtcgcgtaccacg 27811386  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 22580518 - 22580468
Alignment:
Q  44 tttgagggttggcaagtgcatcccctcggcactatgtgcctccgccactga 94  Q
    ||||||||||||||||||||||||||  | |||||||||  ||||||||||    
T  22580518 tttgagggttggcaagtgcatcccctgaggactatgtgcacccgccactga 22580468  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 4809452 - 4809521
Alignment:
Q  104 accgaagctctatactcctatacgtactgaattcttctcatgtcgcgtaccacgaatctgaacgagtacc 173  Q
    ||||||||||||||| || | | |||| ||||||||||||||||||||||| || ||| |||| ||||||    
T  4809452 accgaagctctatacccccaaatgtaccgaattcttctcatgtcgcgtaccgcgtatccgaaccagtacc 4809521  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 3695239 - 3695287
Alignment:
Q  45 ttgagggttggcaagtgcatcccctcggcactatgtgcctccgccactg 93  Q
    ||||| |||||||||||||||  ||| |||||||||||||| |||||||    
T  3695239 ttgagagttggcaagtgcatcttctcagcactatgtgcctctgccactg 3695287  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 29848724 - 29848672
Alignment:
Q  102 gtaccgaagctctatactcctatacgtactgaattcttctcatgtcgcgtacc 154  Q
    ||||||||||||||||| ||| ||||||  ||||||||||||||||| |||||    
T  29848724 gtaccgaagctctatacccctgtacgtatcgaattcttctcatgtcgtgtacc 29848672  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 28043443 - 28043492
Alignment:
Q  105 ccgaagctctatactcctatacgtactgaattcttctcatgtcgcgtacc 154  Q
    |||||||||||||| || ||| |||||||||| || ||||||||||||||    
T  28043443 ccgaagctctatacccccatatgtactgaattattttcatgtcgcgtacc 28043492  T

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