View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14882_low_6 (Length: 425)
Name: NF14882_low_6
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 158 - 392
Target Start/End: Original strand, 3346602 - 3346836
Alignment:
| Q |
158 |
atatgcttactcgtatttttaatccttaatttagattggattagcaacatcatactaataaaatattatgatgctttcaacctcattagaaaaaatgtct |
257 |
Q |
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| T |
3346602 |
atatacttactcgtatttttaatccttaatttagattggattagcaacatcatactaataaaatattatgatgctttcaacctcattagaaaaaatgtct |
3346701 |
T |
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| Q |
258 |
ctctttctttaggcaaaaactaataacgaaatttctatctttattccataagataagcaacacaatttcttttgtccataannnnnnncgagcaaccaat |
357 |
Q |
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| T |
3346702 |
ctctttctttaggcaaaaactaataacgaaatttctatctttattccataagataagcaacacaatttcttttgttcataatttttttcgagcaaccaat |
3346801 |
T |
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| Q |
358 |
tttattagaaatgagagaagtagaaagaatattta |
392 |
Q |
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| T |
3346802 |
tttattagaaatgagagaagtagaaagaatattta |
3346836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 3346446 - 3346519
Alignment:
| Q |
1 |
acaaacacaatacatctggctctctcataacatgccaagttgcttatagctaactagtgttgcacactactatg |
74 |
Q |
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| T |
3346446 |
acaaacacaatacatcttgctctctcataacatgccaagttgcttatagctaactagtgttgcacactactatg |
3346519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 7441717 - 7441664
Alignment:
| Q |
350 |
caaccaattttattagaaatgagagaagtagaaagaatatttaacccacaactc |
403 |
Q |
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| T |
7441717 |
caaccaattttattagaaaggagagaagtacaaagagtacttaacccgcaactc |
7441664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 19459070 - 19459123
Alignment:
| Q |
350 |
caaccaattttattagaaatgagagaagtagaaagaatatttaacccacaactc |
403 |
Q |
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| T |
19459070 |
caaccaaatttattagaaaggagagcagtagaaagagtacttaacccacaactc |
19459123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 19556748 - 19556801
Alignment:
| Q |
350 |
caaccaattttattagaaatgagagaagtagaaagaatatttaacccacaactc |
403 |
Q |
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| T |
19556748 |
caaccaaatttattagaaaggagagcagtagaaagagtacttaacccacaactc |
19556801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Complemental strand, 26529186 - 26529144
Alignment:
| Q |
358 |
tttattagaaatgagagaagtagaaagaatatttaacccacaa |
400 |
Q |
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| T |
26529186 |
tttattagaaaagagagaagtacaaagaatacttaacccacaa |
26529144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 31427426 - 31427478
Alignment:
| Q |
350 |
caaccaattttattagaaatgagagaagtagaaagaatatttaacccacaact |
402 |
Q |
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| T |
31427426 |
caacgaattttattagaaatgggagaaatagaaagagtacttcacccacaact |
31427478 |
T |
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