View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14882_low_7 (Length: 411)
Name: NF14882_low_7
Description: NF14882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14882_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 20 - 401
Target Start/End: Complemental strand, 2892203 - 2891813
Alignment:
| Q |
20 |
gaaccttcctttctagttaaatactaaccaatgagaaaaataatcacaacaaatattaaggatgtttttatggttgttaccttaaatattat--tttcca |
117 |
Q |
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| T |
2892203 |
gaaccttcctttctagttaaatactaaccaatgagaaaaataatcacaacaaatattaaggatgtttttatggttgttaccttaaatattatgttttcca |
2892104 |
T |
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| Q |
118 |
acgaatattatatgtgtgtttttgtttgagaaacaatatctttctaattatgtttcttgatt--------cttgccataaatgtttaaagctgtgattaa |
209 |
Q |
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| T |
2892103 |
acgaacattatacgtgtgtttttgtttgagaaacaatatctttctaattatgtttcttgatttcttgattcttgccataaatgtttaaagctgtgattaa |
2892004 |
T |
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| Q |
210 |
caaagtattccagatattttccacatcactctacacgaaatttactctcacaggtcacgtaaattatctctcttgacagctcactaaaatttactctta- |
308 |
Q |
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| T |
2892003 |
caaagtattccagatattttccacatcactctacacgaaatttactctcacaggtcacgtaaattatctctcttgacagctcattaaaatttactcttat |
2891904 |
T |
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| Q |
309 |
tgaaatttactctgtatttataccacaatcaaatattttttgctaaataagattaaaatcaagatgcatttatatgtgtccaacattgttcat |
401 |
Q |
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| T |
2891903 |
tgaaatttactctgcatttataccacaatcaaatattttttgctaaataagattaaaatcaagatgcatt--tatgtgtccaacattgttcat |
2891813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 309 - 401
Target Start/End: Complemental strand, 2886642 - 2886553
Alignment:
| Q |
309 |
tgaaatttactctgtatttataccacaatcaaatattttttgctaaataagattaaaatcaagatgcatttatatgtgtccaacattgttcat |
401 |
Q |
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| T |
2886642 |
tgaaatttactctgtatttataccacaatcaaatat-ttttgctaaataagattaaaatcaagatgcatt--tatgtgtctaacattgttcat |
2886553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 48871830 - 48871876
Alignment:
| Q |
67 |
aacaaatattaaggatgtttttatggttgttaccttaaatattattt |
113 |
Q |
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| T |
48871830 |
aacaaatattgagtatgtttttatggttattaccttaaaaattattt |
48871876 |
T |
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