View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14883_high_4 (Length: 243)

Name: NF14883_high_4
Description: NF14883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14883_high_4
NF14883_high_4
[»] chr4 (3 HSPs)
chr4 (158-243)||(2804740-2804825)
chr4 (19-68)||(2804596-2804645)
chr4 (36-68)||(19673932-19673964)
[»] chr7 (1 HSPs)
chr7 (34-64)||(48444159-48444189)
[»] chr6 (1 HSPs)
chr6 (36-68)||(7613397-7613429)
[»] chr2 (1 HSPs)
chr2 (24-64)||(27137925-27137965)
[»] chr1 (2 HSPs)
chr1 (36-64)||(4066054-4066082)
chr1 (36-64)||(13183183-13183211)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 2804740 - 2804825
Alignment:
Q  158 gaaagactagcacatatttttattccccttaatattcgccttattgatatatcacgtgtttgttgatgaacatgatttggtcctac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2804740 gaaagactagcacatatttttattccccttaatattcgccttattgatatatcacgtgtttgttgatgaacatgatttggtcctac 2804825  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 2804596 - 2804645
Alignment:
Q  19 gacctcagttttatataagtttaatttcagtgaattaccacttcatttaa 68  Q
    ||||| |||||||| | |||||||||| |||| |||||||||||||||||    
T  2804596 gaccttagttttatgtgagtttaatttaagtggattaccacttcatttaa 2804645  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Complemental strand, 19673964 - 19673932
Alignment:
Q  36 agtttaatttcagtgaattaccacttcatttaa 68  Q
    ||||||||||||||| |||||||||||||||||    
T  19673964 agtttaatttcagtggattaccacttcatttaa 19673932  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 48444189 - 48444159
Alignment:
Q  34 taagtttaatttcagtgaattaccacttcat 64  Q
    |||||||||||||||||||||||||||||||    
T  48444189 taagtttaatttcagtgaattaccacttcat 48444159  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 7613397 - 7613429
Alignment:
Q  36 agtttaatttcagtgaattaccacttcatttaa 68  Q
    |||||||||||||||| ||||||||||||||||    
T  7613397 agtttaatttcagtgatttaccacttcatttaa 7613429  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 27137965 - 27137925
Alignment:
Q  24 cagttttatataagtttaatttcagtgaattaccacttcat 64  Q
    ||||||||| | ||||||||||||||| |||||||||||||    
T  27137965 cagttttatgtgagtttaatttcagtggattaccacttcat 27137925  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 4066054 - 4066082
Alignment:
Q  36 agtttaatttcagtgaattaccacttcat 64  Q
    |||||||||||||||||||||||||||||    
T  4066054 agtttaatttcagtgaattaccacttcat 4066082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 13183211 - 13183183
Alignment:
Q  36 agtttaatttcagtgaattaccacttcat 64  Q
    |||||||||||||||||||||||||||||    
T  13183211 agtttaatttcagtgaattaccacttcat 13183183  T

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