View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14883_low_2 (Length: 396)

Name: NF14883_low_2
Description: NF14883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14883_low_2
NF14883_low_2
[»] chr4 (18 HSPs)
chr4 (59-371)||(2533897-2534210)
chr4 (55-370)||(5035207-5035522)
chr4 (49-371)||(2525339-2525661)
chr4 (65-367)||(2490716-2491018)
chr4 (55-367)||(2518821-2519133)
chr4 (87-285)||(2467212-2467413)
chr4 (65-234)||(2486021-2486197)
chr4 (146-278)||(2547221-2547353)
chr4 (161-284)||(2621417-2621540)
chr4 (161-206)||(2361217-2361262)
chr4 (157-206)||(2381641-2381690)
chr4 (157-206)||(2391269-2391318)
chr4 (166-206)||(12124594-12124634)
chr4 (176-206)||(2482529-2482559)
chr4 (225-279)||(5106632-5106686)
chr4 (322-367)||(2477156-2477201)
chr4 (225-277)||(2367981-2368033)
chr4 (150-201)||(2393836-2393888)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 59 - 371
Target Start/End: Complemental strand, 2534210 - 2533897
Alignment:
Q  59 gaagccgacctc-ggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgag 157  Q
    |||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  2534210 gaagccgacctctggcgagtttctagccgaactctctacttccactttagacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgag 2534111  T
Q  158 ttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtt 257  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||  | | |||||||||||||    
T  2534110 ttccgagctttgtccaagaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgtt 2534011  T
Q  258 tcccttccctcgaagaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcag 357  Q
    ||||||  || ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  2534010 tccctttacttgaagaactcatccttaccgactctggttgtccccataattgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcag 2533911  T
Q  358 gattgctttaactc 371  Q
    ||||||||||||||    
T  2533910 gattgctttaactc 2533897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 55 - 370
Target Start/End: Complemental strand, 5035522 - 5035207
Alignment:
Q  55 ccgagaagccgacctcggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaat 154  Q
    |||||||||  |||||||||||||||||||  |||||||  ||||||||||| |||||||||| |||||||| |||||| ||| ||| || |||||||||    
T  5035522 ccgagaagctcacctcggcgagtttctagcgaaaatctccgcttcccctttaaacctcaaatcgctcactctttaccacgctgtcagggttcctgaaaat 5035423  T
Q  155 gagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgatt 254  Q
    ||||| |||||||||||| |||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||   | | ||||||||||    
T  5035422 gagttgcgagctttgtccgagaagatgaaaagtttaacgtctctcgcttgttatcaaatgagatttatcaacaagaatgatcttttcttgattgctgatt 5035323  T
Q  255 gtttcccttccctcgaagaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccg 354  Q
    |||||||||  ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  5035322 gtttccctttactcgaagaactaatccttactgatactggttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccg 5035223  T
Q  355 caggattgctttaact 370  Q
    ||||||||||||||||    
T  5035222 caggattgctttaact 5035207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 49 - 371
Target Start/End: Complemental strand, 2525661 - 2525339
Alignment:
Q  49 gggggaccgagaagccgacctcggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcct 148  Q
    ||||| ||||||||| |||||| | |||||||||  ||||||||| |||| |||||||||||||||||| |||||||||||||||||   ||  || |||    
T  2525661 gggggcccgagaagctgacctcagtgagtttctaaaccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcct 2525562  T
Q  149 gaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattg 248  Q
     |||||||||| || | |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||   | ||||||    
T  2525561 caaaatgagttgcgtgttttgtccaagaaaatgaaaaatttgacatctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattg 2525462  T
Q  249 ctgattgtttcccttccctcgaagaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaa 348  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||    ||| ||||  |||||||||||||||| |||| |||||||||||||    
T  2525461 ctgattgtttccctctactcgaagaactcatccttaccgacactggttgtcgtagtaactgtgtgatagatagtgatgatcaattcttggcgcttcccaa 2525362  T
Q  349 actccgcaggattgctttaactc 371  Q
    |||||||||||||||||||||||    
T  2525361 actccgcaggattgctttaactc 2525339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 65 - 367
Target Start/End: Complemental strand, 2491018 - 2490716
Alignment:
Q  65 gacctcggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgag 164  Q
    |||||| ||||| |||| |  |||||||| |||| |||||| ||||||||||| ||| |||||||| | ||   ||| || || | |||||| || ||||    
T  2491018 gacctcagcgagcttcttggacaaatctccactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgag 2490919  T
Q  165 ctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttc 264  Q
    ||||||||  || |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    | |||||||||||||||||||     
T  2490918 ctttgtccgggacgatgaaaaatttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttttattgctgattgtttcccttt 2490819  T
Q  265 cctcgaagaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgct 364  Q
     ||||| ||||||||||| |||||||  |||  |||||| |||| ||   |||| | |||||||| |||  ||| ||||||||||||||||| |||||||    
T  2490818 actcgacgaactcatcctaaccgacaacggtaatccccaaaattatgtgctagacaatgatgatcaattattggtgcttcccaaactccgcaagattgct 2490719  T
Q  365 tta 367  Q
    |||    
T  2490718 tta 2490716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 55 - 367
Target Start/End: Complemental strand, 2519133 - 2518821
Alignment:
Q  55 ccgagaagccgacctcggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaat 154  Q
    |||||||| | ||||| ||||| ||||| || |||| |  |||| |||||||||||||| ||| |||||||||||||| |||  ||   | ||| || |     
T  2519133 ccgagaagacaacctcagcgagcttctaaccaaaatatgcactttccctttagacctcatatcgctcactctctaccatcctatcacccttcctaaagaa 2519034  T
Q  155 gagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgatt 254  Q
    | ||| | |||||||||  | || |||||||||||||||| ||||||||||||| |||||| || |||| ||||||||||||||  | ||||||||||||    
T  2519033 gggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttattaaatgaaatatatccacaagaatgatctcttcttcattgctgatt 2518934  T
Q  255 gtttcccttccctcgaagaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccg 354  Q
    |||||||||  ||| ||||||||||||||||||| ||   || | || || |||  |  ||||||| ||||  || |||| |||||||||| ||||||||    
T  2518933 gtttccctttactcaaagaactcatccttaccgataccatttataccaatgatttggtgatagatattgattttcaattcttggcgcttcctaaactccg 2518834  T
Q  355 caggattgcttta 367  Q
    || ||||||||||    
T  2518833 caagattgcttta 2518821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 285
Target Start/End: Complemental strand, 2467413 - 2467212
Alignment:
Q  87 aaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaa 186  Q
    ||||||| |||| |||||| ||||||||||| |||||||||||||||||    |  || |||| | ||| ||| |||||||| |||||  ||||||||||    
T  2467413 aaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaa 2467314  T
Q  187 tttgacatctctcacttgttatcaaatgagatt---tatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatcctt 283  Q
    ||||||||| ||||||||||| | |||    ||   |||| ||||||| |||||   | |||||||||||||||||||||  |||||||| |||||||||    
T  2467313 tttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaagagctcatcctt 2467214  T
Q  284 ac 285  Q
    ||    
T  2467213 ac 2467212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 2486197 - 2486021
Alignment:
Q  65 gacctcggcgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgag 164  Q
    |||||||||||| ||||  | || ||||| |||| |||||| |||||||||||||||||||||||| | ||   |||  | |||| |||||   | ||||    
T  2486197 gacctcggcgagcttcttacacatatctccactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgag 2486098  T
Q  165 ctttgtccaagaagatgaaaaatttgacatctc-------tcacttgttatcaaatgagatttatcaacaagaatga 234  Q
    |||||||||| ||||||||||||||||||||||       ||| ||||||| |||| ||||||||||||||||||||    
T  2486097 ctttgtccaaaaagatgaaaaatttgacatctctcaatagtcaattgttataaaattagatttatcaacaagaatga 2486021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 278
Target Start/End: Complemental strand, 2547353 - 2547221
Alignment:
Q  146 cctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatca 245  Q
    |||| ||||| ||| |||||||||||  | ||||||||||||||||| ||||||| |||||   |||| |  ||||||| |||||||||| |   | |||    
T  2547353 cctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttca 2547254  T
Q  246 ttgctgattgtttcccttccctcgaagaactca 278  Q
    ||||||||||||||||||  || ||||||||||    
T  2547253 ttgctgattgtttccctttacttgaagaactca 2547221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 284
Target Start/End: Original strand, 2621417 - 2621540
Alignment:
Q  161 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcc 260  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||| | ||| |     |||  ||||||||||||   | || |||||||||||||||    
T  2621417 cgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattcttccttgctgattgtttcc 2621516  T
Q  261 cttccctcgaagaactcatcctta 284  Q
    |||  ||||||||||||| |||||    
T  2621517 ctttactcgaagaactcaacctta 2621540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  161 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 206  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 2381641 - 2381690
Alignment:
Q  157 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 206  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2381641 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 2391269 - 2391318
Alignment:
Q  157 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 206  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2391269 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2391318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  166 tttgtccaagaagatgaaaaatttgacatctctcacttgtt 206  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 2482559 - 2482529
Alignment:
Q  176 aagatgaaaaatttgacatctctcacttgtt 206  Q
    |||||||||||||||||||||||||||||||    
T  2482559 aagatgaaaaatttgacatctctcacttgtt 2482529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 5106632 - 5106686
Alignment:
Q  225 acaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcat 279  Q
    |||||| |||||||  | |||||||||||||||||||||  ||||||||||||||    
T  5106632 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactcat 5106686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 2477201 - 2477156
Alignment:
Q  322 tgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 367  Q
    |||||||| |||  ||||||||||||||||||||| ||||||||||    
T  2477201 tgatgatcaattgttggcgcttcccaaactccgcaagattgcttta 2477156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 2367981 - 2368033
Alignment:
Q  225 acaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactc 277  Q
    |||||| |||||||  | |||||||||||||||||||||  ||||||||||||    
T  2367981 acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactc 2368033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 2393836 - 2393888
Alignment:
Q  150 aaaatgagttccgagctttgtccaagaagatg-aaaaatttgacatctctcac 201  Q
    |||||| ||| |||||||||||| | |||||| ||||||||||||||||||||    
T  2393836 aaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctctcac 2393888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University