View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14883_low_3 (Length: 354)
Name: NF14883_low_3
Description: NF14883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14883_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 33761525 - 33761172
Alignment:
| Q |
1 |
aatacattctttctcgttatgataaacaactttgccatttccatcctaaaccagcaaaaagaaattaaatcacagaactatattttgctgcaagcatgtc |
100 |
Q |
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| T |
33761525 |
aatacattctttctcgttatgataaacaactttgccatttccatcctaaaccagcaaaaagaaattaaatcacagaactatattttgctgcaagcatgtc |
33761426 |
T |
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| Q |
101 |
cataaattatagtacctattaaggtgacttaaataatgactatacccgacaatattcatctggtatttttaggacaacaacagttgtaaagtcaacatta |
200 |
Q |
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| T |
33761425 |
cataaattatagtacctattaaggtgacttaaataatgactatacccgacaatattcatctggtattttttggacaacaacagttgtaaagtcaacatta |
33761326 |
T |
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| Q |
201 |
agcgtataggtctttgacagaattagagagaacctgattaactatgaggttagtacatgggaccaaatatattttgagaaagtggatgaagaaaaacata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33761325 |
agcgtataggtctttgacagaattagagagaacctgattaactatgaggttagtacatgggaccaaatatattttgagaaagtggatgaagaaaaacata |
33761226 |
T |
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| Q |
301 |
aagaatctttaaaagatagcatcaacacaaataccatacctagccatatacttt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33761225 |
aagaatctttaaaagatagcatcaacacaaataccatacctagccatatacttt |
33761172 |
T |
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