View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14883_low_5 (Length: 331)
Name: NF14883_low_5
Description: NF14883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14883_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 33760883 - 33761200
Alignment:
| Q |
1 |
atcatcataatgtcattggcccgtgtctgttgctggctctttagttgtctaagaaatcattggtgacttacgtatgt--tttaaaattttctatcaattg |
98 |
Q |
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| T |
33760883 |
atcatcataatgtcattgacccgtgtctgttgctgtctctttagttgtctaagaaaccattggtgacttacgtatgtgttttaaaattttctatcaattg |
33760982 |
T |
|
| Q |
99 |
aacagttttcaaagatggtggcaaggaagcaaagaaggaggactcaacagcttcctcggtcaaatgttattttgttaggacagaatcatcttgttctgca |
198 |
Q |
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| T |
33760983 |
aacagtttccaaagatggtggcaaggaagcaaagaaggaggactcaacagcttcctcggtcaaatgttattttgttaggacagaatcatcttgttctgca |
33761082 |
T |
|
| Q |
199 |
gatgaaagggaatcgtacatcttgtcaaataagacaatgtctgattgtagatannnnnnnatgcatgcacacttgttacccagtattgaaaagtatatgg |
298 |
Q |
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| T |
33761083 |
gatgaaagggaatcgtacatcttgtcaaataagacaatgtctgattgtagatctttttttatgcatgcacacttgttacccagtattgaaaagtatatgg |
33761182 |
T |
|
| Q |
299 |
ctaggtatggtatctgtg |
316 |
Q |
| |
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||||||||||||| |||| |
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| T |
33761183 |
ctaggtatggtatttgtg |
33761200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 3734099 - 3734019
Alignment:
| Q |
114 |
tggtggcaaggaagcaaagaaggaggactcaacagcttcctcggtcaaatgttattttgttaggacagaatcatcttgttct |
195 |
Q |
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|||||| ||||||| |||||| |||| ||||| |||||||||||||||||| | |||||||||| |||||||||||||| |
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| T |
3734099 |
tggtggaaaggaagagaagaagaaggatccaacaagttcctcggtcaaatgtta-tatgttaggacaaaatcatcttgttct |
3734019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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