View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14883_low_8 (Length: 224)
Name: NF14883_low_8
Description: NF14883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14883_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 52443607 - 52443394
Alignment:
| Q |
1 |
gcttccccgattatctttgggcaagccattgttgaactccatgcaatagatctagtgcttttgttggctaaacaattgaataaccattacttgttacaca |
100 |
Q |
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| T |
52443607 |
gcttccccgattatctttgggcaagccattgttgaactccatgcaatagatcaagtgcttttgttggctaaacaattgaatcaccattacttgttacaca |
52443508 |
T |
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| Q |
101 |
taatctcttcactgtgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaagacat------cctccttcatcaaaatc |
194 |
Q |
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| T |
52443507 |
taatctcttcactatgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaagacatcaaagacctcctccatcaaaatc |
52443408 |
T |
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| Q |
195 |
gacatgttcatatt |
208 |
Q |
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|||||||||||||| |
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| T |
52443407 |
gacatgttcatatt |
52443394 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 37304434 - 37304387
Alignment:
| Q |
40 |
catgcaatagatctagtgcttttgttggctaaacaattgaataaccat |
87 |
Q |
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| T |
37304434 |
catgcaatacatcaagggcttttgttggctaaacaattgaataaccat |
37304387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 12299995 - 12300083
Alignment:
| Q |
86 |
attacttgttacacataatctcttcactgtgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaaga |
174 |
Q |
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| T |
12299995 |
attacttgttacacagattttcttcattgtgttgatatcctgcatgttcaaacaccaaagttttacaaatatgtcactttgatccaaga |
12300083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 35797954 - 35798042
Alignment:
| Q |
90 |
cttgttacacataatctcttcactgtgttgataccctccatttttaaataccaagatttcgcaaatatgtcactttgatcgaagacatc |
178 |
Q |
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| T |
35797954 |
cttgttgcacatattctcttcattatgttgatatcctacaagttcaaacaccaagatttcacaaatatgacactctgatccaaaacatc |
35798042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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