View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14884_high_5 (Length: 268)
Name: NF14884_high_5
Description: NF14884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14884_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 35850065 - 35850328
Alignment:
| Q |
1 |
agatcatgaatattctaaatcttttgatttgacaacatgggatcatggacttgttataaatatgtgtatgtaggaattaaataaagttgagcacacatgc |
100 |
Q |
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| T |
35850065 |
agatcatgaatattctaaatcttttgatttgacaacatgggatcatggacttgttataaatatgtgtatgtaggaattaaataaagttgagcacacatgc |
35850164 |
T |
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| Q |
101 |
tattacctgaccaattatccctaaacacatctatgtgttgactattacctattggctacttgatgtcctgcttcataccaaacatagcttcatatttgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
35850165 |
cattacctgaccaattatccctaaacacatctatgtgttgactattacctattggcta----aagtcctgcttcataccaaacatagcttcatatttgtt |
35850260 |
T |
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| Q |
201 |
acacatgactcgaattgtaagtcacagtgagggaaataatgaggttagcataggggagtaccaaggaa |
268 |
Q |
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| T |
35850261 |
acacatgactcgaattgtaagtcacagtgagggaaataatgaggttaacataggggagtaccaaggaa |
35850328 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 44384755 - 44384802
Alignment:
| Q |
218 |
taagtcacagtgagggaaataatgaggttagcataggggagtaccaag |
265 |
Q |
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| T |
44384755 |
taagtcacagtgagggaaataatgaggttcacataggggagtaccaag |
44384802 |
T |
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