View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14884_high_6 (Length: 251)
Name: NF14884_high_6
Description: NF14884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14884_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10838632 - 10838391
Alignment:
| Q |
1 |
tttactgaagagaggatgagaagtataatgaatgagatcaaatgaatattgcaaattaaatgaagaaaggtgagatatatatgtttataaacgaagcttt |
100 |
Q |
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| T |
10838632 |
tttactgaagagaggatgagaagtataatgaatgagatcaaatgaatattgcaaattaaatgaagaaatgtgagatatatatgtttataaacgaagcttt |
10838533 |
T |
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| Q |
101 |
aaatagaaaagccataaataataagagaagcatgcatgaggatgaaataaataggaaagtgtagtgatagagtgggaaacaaaagtggtcttttcacttg |
200 |
Q |
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| T |
10838532 |
aaatagaaaagccataaataataagagaagcatgcatgaggatgaaataaataggaaagtgtagtgatagagtgggaaacaaaagtggtcttttcacttg |
10838433 |
T |
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| Q |
201 |
tcactttaaactttaaataaataattcatattccttcatctc |
242 |
Q |
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| T |
10838432 |
tcactttaaactttaaataaataattcagattcattcatctc |
10838391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 10870256 - 10870219
Alignment:
| Q |
36 |
gatcaaatgaatattgcaaattaaatgaagaaaggtga |
73 |
Q |
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|||||||| |||||| |||||||||||||||||||||| |
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| T |
10870256 |
gatcaaattaatatttcaaattaaatgaagaaaggtga |
10870219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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