View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14884_low_1 (Length: 506)
Name: NF14884_low_1
Description: NF14884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14884_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 34166656 - 34167152
Alignment:
| Q |
1 |
tcatgtgaattttaagtgcttaacagctcgcctgctaacgattttcatttaactgtattctatagcaaaaacttgctaaagagggaggggttcgaattga |
100 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34166656 |
tcatgtgaattttaagggcttaacagctcacctgctaacgattttcatttaactgtattctatagcaaaaacttgctaaagagggaggggttcgaattga |
34166755 |
T |
|
| Q |
101 |
tcgcaatcgtgatattgaaaacctgtgggagttttatcaacagtacaagcgacaacatagagttgatgacattcagagagaagaacagagaatgcaagag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34166756 |
tcgcaatcgtgatattgaaaacctgtgggagttttatcaacggtacaagcgacaacatagagttgatgacattcagagagaagaacagagaatgcaagag |
34166855 |
T |
|
| Q |
201 |
tctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgtaatttatttcttgagtgaaatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34166856 |
tctggaacttttagctctacactgggagagtatgtccaacttatgaatttttagctaattaaactttccaatgacgtaatttatttcttgagtgaaatta |
34166955 |
T |
|
| Q |
301 |
gaaggttgtcgtgatcctactagagaaatggact-nnnnnnngcttataaagggtagacaatcctcagcatttaagccagtttgtcggggacgacttaga |
399 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34166956 |
gaaggttgtcgtgatcctactagagaaatggactaaaaaaaagcttataaagggtagacaatcctcagcatttaagccagtttgtcggggacgacttaga |
34167055 |
T |
|
| Q |
400 |
ctcaaacctaggatgatattataacctgataaatgtgnnnnnnnnacccatcagtaaaggtacaaactaaaatgttgcgtcctaggcatgatgatgt |
496 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34167056 |
ctcaaacctaggatgatattataacctgataaatgtgttttttttacccatcagtaaaggtacaaactaaaatgttgcgtcctaggcatgatgatgt |
34167152 |
T |
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