View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14884_low_4 (Length: 399)

Name: NF14884_low_4
Description: NF14884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14884_low_4
NF14884_low_4
[»] chr5 (9 HSPs)
chr5 (1-297)||(5812743-5813040)
chr5 (42-297)||(15388688-15388942)
chr5 (33-285)||(5249640-5249899)
chr5 (53-285)||(33642844-33643079)
chr5 (53-285)||(13611363-13611599)
chr5 (12-239)||(35343391-35343623)
chr5 (347-392)||(5813091-5813136)
chr5 (347-382)||(15388986-15389021)
chr5 (347-392)||(33642746-33642791)
[»] chr2 (2 HSPs)
chr2 (1-285)||(33470663-33470947)
chr2 (347-392)||(33470562-33470607)
[»] chr7 (3 HSPs)
chr7 (1-296)||(20418541-20418837)
chr7 (1-269)||(20437340-20437609)
chr7 (347-392)||(20419387-20419432)
[»] chr1 (4 HSPs)
chr1 (1-285)||(32905572-32905860)
chr1 (347-392)||(32905924-32905969)
chr1 (3-70)||(24230500-24230567)
chr1 (53-140)||(44825675-44825763)
[»] chr8 (4 HSPs)
chr8 (45-285)||(38070226-38070468)
chr8 (347-392)||(38069837-38069882)
chr8 (200-284)||(1431074-1431158)
chr8 (1-45)||(38070610-38070654)
[»] chr4 (2 HSPs)
chr4 (53-285)||(54132510-54132746)
chr4 (56-161)||(16861505-16861611)
[»] chr6 (3 HSPs)
chr6 (206-285)||(16973291-16973370)
chr6 (200-266)||(360243-360309)
chr6 (24-96)||(16973475-16973547)
[»] chr3 (1 HSPs)
chr3 (188-265)||(34739012-34739089)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 5812743 - 5813040
Alignment:
Q  1 taatattctaggggagaaaatttcaatgcactgtgtggagtgataaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaa 99  Q
    |||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5812743 taatattctaggggagcaaaatttaatgcactgtgtagagtgataaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataacaaa 5812842  T
Q  100 tatctccatatcgaagaacaattataaatttaaaccaacttgccatgattttagactattttttaaggatgcgacactgtggagcctattgatgactcag 199  Q
    ||||||| | || |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  5812843 tatctccgtttcaaagaacaaatataaatttaaaccaacttaccatgattatagactattttttaaggatgcgacactgtggagcctattgatgactcaa 5812942  T
Q  200 ttgttcctttttatgcattcaagttcacatcatatgataatatttttaaagttaagaatgaagattcacacctaattggtatttttaaggactttttt 297  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5812943 ttgttcctttttatgcattcaagtttacatcatatgataaaattattaaagttaagaatgaagattcacacctaattggtatttttaaggagtttttt 5813040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 42 - 297
Target Start/End: Original strand, 15388688 - 15388942
Alignment:
Q  42 gataaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaatatctccatatcgaagaacaattataaatttaaaccaactt 140  Q
    |||||| ||||||||||||||   ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  15388688 gataaatttgcaaaatatcaa---atgttggttaagggaatgtgttacgagataacaaatatctccatttcaaagaacaattataaatttaaaccaactt 15388784  T
Q  141 gccatgattttagactattttttaaggatgcgacactgtggagcctattgatgactcagttgttcctttttatgcattcaagttcacatcatatgataat 240  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |     
T  15388785 gccatgattatagactattttttaaggatgcgacactatggagcctattgatgactcagttgttcctttttatgtattcaagttcacatcatatgatgaa 15388884  T
Q  241 atttttaaagttaagaatgaagattcacacctaattggta-tttttaaggactttttt 297  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  15388885 atttttgaagttaagaatgaagattcacacctaattggtattttttaaggagtttttt 15388942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 33 - 285
Target Start/End: Original strand, 5249640 - 5249899
Alignment:
Q  33 gtgtggagtgataaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaatatctccatatcgaagaacaattataaattta 131  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||  | || ||||| || ||||||||||    
T  5249640 gtgtggagtgacaaagttgcaaaacatcaatctatgttggttgagagaatgtgttacgagataacaaatatctcagtttctaagaagaactataaattta 5249739  T
Q  132 aaccaacttgccatgatttta--gactattttt---taaggatgcgac-actgtggagcctattgatgactcagttgttcctttttatgcattcaagttc 225  Q
    ||| |||||| ||||| | ||  ||||||| ||   ||| |||  ||| || ||||| || |||||||||||| |||||||||||||||||||||| ||     
T  5249740 aactaacttgacatgactatatagactattattatttaaagatatgaccaccgtggaaccgattgatgactcaattgttcctttttatgcattcaacttt 5249839  T
Q  226 acatcatatgataatatttttaaagttaagaatgaagattcacacctaattggtattttt 285  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||    
T  5249840 acatcatatgatgaaatttttaaagttaagaatgaagattcacacctaattgatattttt 5249899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 53 - 285
Target Start/End: Complemental strand, 33643079 - 33642844
Alignment:
Q  53 aaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaatatctccatatcgaagaacaattataaatttaaaccaacttgccatgatttt 151  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||  | || |||||||||| |||||||||||||||||| ||||| | |    
T  33643079 aaaatatcaatttatgttgattgagggaatgtgttacgagataacaaatatctcagtttctaagaacaattttaaatttaaaccaacttgtcatgactat 33642980  T
Q  152 agacta-ttttttaaggatgcga-cactgtggagcctattgatgactcagttgttcctttttatgcattcaagttcacatcatatgataatatttttaaa 249  Q
    |||||| ||||||||||||  || |||  |||||||  ||||| | | | |||||  |||| ||||| |||| |||||||| |||||| | |||||||||    
T  33642979 agactatttttttaaggatatgatcaccatggagccggttgattatttaattgttatttttgatgcaatcaaattcacatcttatgatgaaatttttaaa 33642880  T
Q  250 gttaagaatgaagattcacacctaattggtattttt 285  Q
    | ||||||| ||||||||| ||||||||||||||||    
T  33642879 gctaagaattaagattcacgcctaattggtattttt 33642844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 285
Target Start/End: Complemental strand, 13611599 - 13611363
Alignment:
Q  53 aaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaatatctccatatcgaagaacaattataaatttaaaccaacttgccatgatttt 151  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||  | || |||||||| | |||||||||||||||||  ||||| | |    
T  13611599 aaaatatcaatttatgttgattgagggaatgtgttacgagataacaaatatctcagtttctaagaacaactttaaatttaaaccaacttatcatgactat 13611500  T
Q  152 agacta--ttttttaaggatgcga-cactgtggagcctattgatgactcagttgttcctttttatgcattcaagttcacatcatatgataatatttttaa 248  Q
    ||||||  |||||||||||| ||| |||  |||||||  | ||| | | | |||||  |||| ||||| |||| |||||||| |||||| | ||||||||    
T  13611499 agactattttttttaaggatacgaccaccatggagccggtcgattatttaattgttatttttgatgcaatcaaattcacatcttatgatgaaatttttaa 13611400  T
Q  249 agttaagaatgaagattcacacctaattggtattttt 285  Q
    || ||||||| ||||||||| ||||||||||||||||    
T  13611399 agctaagaattaagattcacgcctaattggtattttt 13611363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 239
Target Start/End: Complemental strand, 35343623 - 35343391
Alignment:
Q  12 gggagaaaatttcaatgcactgtgtggagtgataaagttgcaaaata---tcaatctatgttggttgagggaatgtgttacgagataa-aaatatctcca 107  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||||| ||||||||       
T  35343623 gggagcaaaattcaatgcactgtatggagtgataaagttgcaaaatactatcaatctatgttggttgagagaatgtgttacgagataacaaatatcttat 35343524  T
Q  108 tatcgaagaacaattataaatttaaaccaacttgccatgattttagactattttttaaggatgcga-cactgtggagcctattgatgactcagttgttcc 206  Q
    | |  ||||||   ||||||||| |||||||||  | ||| | || |||||| |||||| ||  || |||  ||||| | |||||||| ||| |||||||    
T  35343523 ttttcaagaactgctataaattttaaccaacttatcgtgactatatactattctttaagaatatgaccaccatggagtcgattgatgattcaattgttcc 35343424  T
Q  207 tttttatgcattcaagttcacatcatatgataa 239  Q
    ||||| ||||||||| |||||||| ||||||||    
T  35343423 tttttgtgcattcaaattcacatcttatgataa 35343391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 5813091 - 5813136
Alignment:
Q  347 attgcattggatattaacttcacctttcacatttttgtaagatatt 392  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  5813091 attgtattggatattaacttcacctttcacatttttgtaagatatt 5813136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 347 - 382
Target Start/End: Original strand, 15388986 - 15389021
Alignment:
Q  347 attgcattggatattaacttcacctttcacattttt 382  Q
    ||||||||||||||||||||||||||||||||||||    
T  15388986 attgcattggatattaacttcacctttcacattttt 15389021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 33642791 - 33642746
Alignment:
Q  347 attgcattggatattaacttcacctttcacatttttgtaagatatt 392  Q
    ||||||||||||||||| ||| ||||||| |||||| |||||||||    
T  33642791 attgcattggatattaagttctcctttcatatttttttaagatatt 33642746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 33470947 - 33470663
Alignment:
Q  1 taatattctaggggagaaaatttcaatgcactgtgtggagtgataaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataaaaat 100  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33470947 taatattctaggagagaaaaattcaatgcactgtgtggactgataaaatagcacaatatcaatctatgttggttgagggaatgtgttacgagataaaaat 33470848  T
Q  101 atctccatatcgaagaacaattataaatttaaaccaacttgccatgattttagactattttttaaggatgcgacactgtggagcctattgatgactcagt 200  Q
    |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33470847 atctccatttcaaagaacaattataaatttaaaccaacttgtcatgattttagactattttttaaggatgcgacattgtggagcctattgatgactcagt 33470748  T
Q  201 tgttcctttttatgcattcaagttcacatcatatgataatatttttaaagttaagaatgaagattcacacctaattggtattttt 285  Q
    ||||| ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||    
T  33470747 tgttcttttttatgcattcaagttcacatcatatgatgaaaattttaaagttaagaatgaagattcacacctgattggtattttt 33470663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 33470607 - 33470562
Alignment:
Q  347 attgcattggatattaacttcacctttcacatttttgtaagatatt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33470607 attgcattggatattaacttcacctttcacatttttgtaagatatt 33470562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 20418541 - 20418837
Alignment:
Q  1 taatattctaggggagaaaatttcaatgcactgtgtggagtgataaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaa 99  Q
    |||||||||||||||| ||| ||||||||| || ||| ||||||||| || |||| ||||||| ||||||||||||||||||||||||||| |||| |||    
T  20418541 taatattctaggggagcaaaattcaatgcattgagtgaagtgataaattttcaaattatcaatatatgttggttgagggaatgtgttacgaaataagaaa 20418640  T
Q  100 tatctccatatcgaagaacaattataaatttaaaccaacttgccatgattttagactattttttaaggatgcgacactgtggagcctattgatgactcag 199  Q
    ||||||| | || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20418641 tatctccgtttcaaagaacaattataaatttaaaccaacttgccatgattatagactattttttaaggatgcgacactgtggagcctattgatgactcag 20418740  T
Q  200 ttgttcctttttatgcattcaagttcacatcatatgataatatttttaaagttaagaatgaagattcacacctaattggtattt-ttaaggacttttt 296  Q
    | ||||| |||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||    
T  20418741 tggttcc-ttttattcattcaagttcacatcatatgatgaaatttttaaagttaagaatgaagattaacacctaattggtatttgttaaggagttttt 20418837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 20437340 - 20437609
Alignment:
Q  1 taatattctaggggagaaaatttcaatgcactgtgtggagtgataaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaa 99  Q
    |||||||||||||||  ||| ||||||||| || ||| ||||||||| ||||||||||||||| |||||||||||||||||||||| |||| |||| |||    
T  20437340 taatattctaggggaccaaaattcaatgcattgagtgaagtgataaatttgcaaaatatcaatatatgttggttgagggaatgtgtaacgaaataacaaa 20437439  T
Q  100 tatctccatatcgaagaacaattataaatttaaaccaacttgccatgattttagactattttttaaggatgcgacactgtggagcctattgatg-actca 198  Q
    ||||||| | || ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||| |||||    
T  20437440 tatctccgtttcaaagaacaattataaatttaaaccaacttgccatgattattgactattttttaaggatgtgacactgtggagccttttgatgcactca 20437539  T
Q  199 gttgttcctttttatgcattcaagttcacatcatatgataatatttttaaagttaagaatgaagattcaca 269  Q
    |||||||| |||||||||||  | ||||||||||||||| | |||||||||||||||||||||||||||||    
T  20437540 gttgttcc-ttttatgcatttcaattcacatcatatgatgaaatttttaaagttaagaatgaagattcaca 20437609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 20419387 - 20419432
Alignment:
Q  347 attgcattggatattaacttcacctttcacatttttgtaagatatt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20419387 attgcattggatattaacttcacctttcacatttttgtaagatatt 20419432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 32905572 - 32905860
Alignment:
Q  1 taatattctaggggagaaaatttcaatgcactgtgtggagtgataaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaa 99  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||| ||||||| |||    
T  32905572 taatattctaggggagcaaaattcaatgcactgtgtggagttataaagtcgcaaaatattaatctatgctggttgagggaatgtgttatgagataacaaa 32905671  T
Q  100 tatctccatatcgaagaacaattataaatttaaaccaacttgccatgattttagactattttttaaggatgcgacactgtggagcctattgatgactcag 199  Q
    ||||||  | || ||||||||||||||||||||| ||| ||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  32905672 tatctctgtttcaaagaacaattataaatttaaatcaatttgtcatgattatagactattttttagggatgcgacattgtggagcctattgatgactcag 32905771  T
Q  200 ttgttcctttttatgcattcaagttcacatcatatgataatatttttaaagttaagaat---gaagattcacacctaattggtattttt 285  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||   |||||||||||||||||||||||||||    
T  32905772 ttgttcctttttatgcattcaagttcatatcatatgatgaaatttttaaatttaagaatgaagaagattcacacctaattggtattttt 32905860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 32905924 - 32905969
Alignment:
Q  347 attgcattggatattaacttcacctttcacatttttgtaagatatt 392  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  32905924 attgcattggatattaatttcacctttcacatttttgtaagatatt 32905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 24230500 - 24230567
Alignment:
Q  3 atattctaggggagaaaatttcaatgcactgtgtggagtgataaagttgcaaaatatcaatctatgtt 70  Q
    |||||||||||||  ||| |||||||||||||||| || |  || ||| |||||||||||||||||||    
T  24230500 atattctaggggatcaaaattcaatgcactgtgtgaagcggcaatgttacaaaatatcaatctatgtt 24230567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 44825675 - 44825763
Alignment:
Q  53 aaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaatatctccatatcgaagaacaattataaatttaaaccaactt 140  Q
    |||||||||||||| |||| |||| | ||| ||||| ||||||| ||||||||  || || || |||||  ||||||||||||||||||    
T  44825675 aaaatatcaatctacgttgattgatgtaatatgttatgagataagaaatatcttaatttctaataacaaccataaatttaaaccaactt 44825763  T

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Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 45 - 285
Target Start/End: Complemental strand, 38070468 - 38070226
Alignment:
Q  45 aaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaatatctccatatcgaagaacaattataaatttaaaccaacttgcc 143  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| | | | || |||||||||||||||||||||||||||||||    
T  38070468 aaagttgtaaaatatcaatctatgttggttgagggaatgtgttatgagataacaaatattttcgtttcaaagaacaattataaatttaaaccaacttgcc 38070369  T
Q  144 atgattttagactatttttt-aaggatgcgacactgtggagcctattgatgactcagttgttcctttttatgcattcaagttcacatcatatgataatat 242  Q
    |||| | || |||||||||| |||||| ||||| ||||||| ||||||||||| ||| |||||||||||||||||| ||||||| ||||||| || | ||    
T  38070368 atgactataaactatttttttaaggatacgacattgtggagtctattgatgacgcagctgttcctttttatgcatttaagttcatatcatataatgaaat 38070269  T
Q  243 ttttaaagttaagaatgaagattcacacctaattggtattttt 285  Q
    ||||||||||||||||||||||||||| ||||||  |||||||    
T  38070268 ttttaaagttaagaatgaagattcacaactaatttttattttt 38070226  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 38069882 - 38069837
Alignment:
Q  347 attgcattggatattaacttcacctttcacatttttgtaagatatt 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38069882 attgcattggatattaacttcacctttcacatttttgtaagatatt 38069837  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 1431074 - 1431158
Alignment:
Q  200 ttgttcctttttatgcattcaagttcacatcatatgataatatttttaaagttaagaatgaagattcacacctaattggtatttt 284  Q
    ||||| ||||||||| || ||| |||||||| ||||||    |||||||||||| ||||||||||||||||||||| ||||||||    
T  1431074 ttgttactttttatgtatccaaattcacatcttatgatggagtttttaaagttaggaatgaagattcacacctaataggtatttt 1431158  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38070654 - 38070610
Alignment:
Q  1 taatattctaggggagaaaatttcaatgcactgtgtggagtgata 45  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||    
T  38070654 taatattctaggggagcaaaattcaatgcactctgtggagtgata 38070610  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 53 - 285
Target Start/End: Complemental strand, 54132746 - 54132510
Alignment:
Q  53 aaaatatcaatctatgttggttgagggaatgtgttacgagataa-aaatatctccatatcgaagaacaattataaatttaaaccaacttgccatgatttt 151  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||  | || |||||||| | |||||||||||||||||| ||||| | |    
T  54132746 aaaatatcaatttatgttgattgagggaatgtgttacgagataacaaatatctcagtttctaagaacaactttaaatttaaaccaacttgtcatgactat 54132647  T
Q  152 agacta--ttttttaaggatgcga-cactgtggagcctattgatgactcagttgttcctttttatgcattcaagttcacatcatatgataatatttttaa 248  Q
    ||||||  ||||||||||||  || |||  |||||||  ||||| | | | |||||  |||| ||||| |||| |||||||| |||||| | ||||||||    
T  54132646 agactattttttttaaggatatgaccaccatggagccggttgattatttaattgttatttttgatgcaatcaaattcacatcttatgatgaaatttttaa 54132547  T
Q  249 agttaagaatgaagattcacacctaattggtattttt 285  Q
    || ||||||| ||||||||| ||||||||||||||||    
T  54132546 agctaagaattaagattcacgcctaattggtattttt 54132510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 16861611 - 16861505
Alignment:
Q  56 atatcaatctatgttggttgagggaatgtgttacgagataaaaa-tatctccatatcgaagaacaattataaatttaaaccaacttgccatgattttaga 154  Q
    |||||||||||||||| || | | ||| ||||| |||||||||| |||||  || || ||||||||  |||||||||||||||||| | |||| | ||||    
T  16861611 atatcaatctatgttgattaatgtaatatgttatgagataaaaagtatcttaatttctaagaacaaccataaatttaaaccaacttcctatgaatataga 16861512  T
Q  155 ctatttt 161  Q
     ||||||    
T  16861511 atatttt 16861505  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 16973370 - 16973291
Alignment:
Q  206 ctttttatgcattcaagttcacatcatatgataatatttttaaagttaagaatgaagattcacacctaattggtattttt 285  Q
    |||||||||||||||| ||||||||| ||||||| |  |||||||||||||||||| ||||| || |||||| |||||||    
T  16973370 ctttttatgcattcaaattcacatcacatgataaaaaatttaaagttaagaatgaatattcatacttaattgatattttt 16973291  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 266
Target Start/End: Complemental strand, 360309 - 360243
Alignment:
Q  200 ttgttcctttttatgcattcaagttcacatcatatgataatatttttaaagttaagaatgaagattc 266  Q
    ||||||||||| ||||||||||||||||||| |||||| | | |||||| ||||| |||||||||||    
T  360309 ttgttccttttcatgcattcaagttcacatcgtatgatgaaagttttaatgttaaaaatgaagattc 360243  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 16973547 - 16973475
Alignment:
Q  24 caatgcactgtgtggagtgataaagttgcaaaatatcaatctatgttggttgagggaatgtgttacgagataa 96  Q
    |||||||||||| |||| || ||||||  ||||||||||||||| ||| |  || ||||||||||||| ||||    
T  16973547 caatgcactgtggggagcgacaaagtttgaaaatatcaatctatattgatcaagagaatgtgttacgaaataa 16973475  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 34739012 - 34739089
Alignment:
Q  188 ttgatgactcagttgttcctttttatgcattcaagttcacatcatatgataatatttttaaagttaagaatgaagatt 265  Q
    ||||||| ||| || ||| |||||||||||| |||||||| || |||||||| ||||||||||  |||||||||||||    
T  34739012 ttgatgattcaattattcatttttatgcatttaagttcacttcgtatgataaaatttttaaagccaagaatgaagatt 34739089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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