View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14884_low_5 (Length: 286)
Name: NF14884_low_5
Description: NF14884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14884_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 15970407 - 15970148
Alignment:
| Q |
18 |
aagactaccccatgcttggcgaagaggacatggacatggtgcaggtggatttggatgtccataaaagggacaaatctgagtatgaaccttagtttttcca |
117 |
Q |
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| T |
15970407 |
aagactaccccacgcttggcgaagaggacatggacatgatgcaggtggatttggatgtccataaaagggacaaatcagagtatgaaccttagtttttcca |
15970308 |
T |
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| Q |
118 |
aattggtcgaggtaacgcaagaattcaaggacatgagctccactacaacgtgagagtgaaagtggtggtctatggtttcttaggtattgtccaaatgtgt |
217 |
Q |
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| T |
15970307 |
aattggtcgaggtatcgcaagaattcaaggacatgagctccactacaacgtgagagtgaaagtggtggtctatggtttcttaggtattgtccaaatgtgt |
15970208 |
T |
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| Q |
218 |
tccaatctcttctcttttgattctcgtatctacttggtgtcgttgttgatgttgttgatg |
277 |
Q |
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| T |
15970207 |
tccaatctcttctcttttgattctcgtatctacttggtgtcgttgttgatgttgttgatg |
15970148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 33672094 - 33672318
Alignment:
| Q |
18 |
aagactaccccatgcttggcgaagaggacatggacatggtgcaggtggatttggatgtccataaaagggacaaatctgagtatgaaccttagtttttcca |
117 |
Q |
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| T |
33672094 |
aagacttccccaagcttgtcgtagaggacaaggacaaggtgcaggtgggtttggatgaccaaaaaatggacaaatctgtgaatgaaccttagttttccca |
33672193 |
T |
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| Q |
118 |
aattggtcgaggtaacgcaagaattcaaggacatgagctccactacaacgtgagagtgaaagtggtggtctatggtttcttaggtattgtccaaatgtgt |
217 |
Q |
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| T |
33672194 |
aactgatcaagataccttaaaaattcaagaacatgtgctccactacaacgtgagagtgaaagtggtggtctatggtttcttaggtattgaccaaaagtgt |
33672293 |
T |
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| Q |
218 |
tccaatctcttctcttttgattctc |
242 |
Q |
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| T |
33672294 |
tccagtctcttcttttttgattctc |
33672318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 30503990 - 30504064
Alignment:
| Q |
18 |
aagactaccccatgcttggcgaagaggacatggacatggtgcaggtggatttggatgtccataaaagggacaaat |
92 |
Q |
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| T |
30503990 |
aagactaccccaagcttgtcttaatggacatggacatggtgctggagggtttggatgtccatagaatggacaaat |
30504064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 35608745 - 35608696
Alignment:
| Q |
19 |
agactaccccatgcttggcgaagaggacatggacatggtgcaggtggatt |
68 |
Q |
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| T |
35608745 |
agactaccccacgcttgacgaagaggacatggacaaggagctggtggatt |
35608696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 37975083 - 37974946
Alignment:
| Q |
99 |
atgaaccttagtttttccaaattggtcgaggtaacgcaagaattcaaggacatgagctccactacaacgtgagagtgaaagtggtggtctatggtttctt |
198 |
Q |
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| T |
37975083 |
atgaaccttggtttttccaaactgatccaagtaacgaagaaactcaagaacatgtgcaccactacaacgtgagagtgttaatggtggacgatggtttttt |
37974984 |
T |
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| Q |
199 |
aggtattgtccaaatgtgttccaatctcttctcttttg |
236 |
Q |
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| T |
37974983 |
aggtattgaccaaaagtgttccaatcacgtctcttttg |
37974946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 38980667 - 38980600
Alignment:
| Q |
25 |
ccccatgcttggcgaagaggacatggacatggtgcaggtggatttggatgtccataaaagggacaaat |
92 |
Q |
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| T |
38980667 |
ccccatgcttgcctcagaggacatggacatggtgctggtggatttggatgcccataaaatggacaaat |
38980600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 32002323 - 32002379
Alignment:
| Q |
180 |
tggtggtctatggtttcttaggtattgtccaaatgtgttccaatctcttctcttttg |
236 |
Q |
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| T |
32002323 |
tggtggtctttgattccttaagtattgtccaaaagtgttccaatctcttctcttttg |
32002379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 39556413 - 39556377
Alignment:
| Q |
201 |
gtattgtccaaatgtgttccaatctcttctcttttga |
237 |
Q |
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| T |
39556413 |
gtattgaccaaaagtgttccaatctcttctcttttga |
39556377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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