View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14884_low_8 (Length: 238)
Name: NF14884_low_8
Description: NF14884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14884_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10838883 - 10838658
Alignment:
| Q |
18 |
cttcagagttcagacagagagacaaaccaataacaa-----ttaatttgttattcttttttacagtatttaatttgttaatatttaaaatgctacaagtt |
112 |
Q |
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| T |
10838883 |
cttcagagttcagacagagagacaaaccaataacaaggactttaatttgttattcttttttacagtatttaatttgttaatatttaaaatgctacaagtt |
10838784 |
T |
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| Q |
113 |
gaagggcaagttatattatgtttgctctctttgttttcaaatattttcgtaatcaaattaaataaatagatatataagttttgaaagaacaaacctcact |
212 |
Q |
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| T |
10838783 |
gaagggcaagttatattatgtttgctctctttgttttcaaatattttcgtaatcaaattaaataaatagatatataagttttgaaagaaccaacctcact |
10838684 |
T |
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| Q |
213 |
atttcgaaatggatgtccataagttt |
238 |
Q |
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| T |
10838683 |
atttcgaaatggatggccataagttt |
10838658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 10870356 - 10870313
Alignment:
| Q |
169 |
attaaataaatagatatataagttttgaaagaacaaacctcact |
212 |
Q |
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| T |
10870356 |
attaaataaatagatatataagttttgaaggaacaaacctcact |
10870313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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