View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_high_1 (Length: 602)
Name: NF14885_high_1
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 22059034 - 22058698
Alignment:
| Q |
13 |
gataatactaaggattaggtttttatagaggcttggagaatatgacatttaggtgaaaggctttgttatggacccttaattgtgatttattaacttaaat |
112 |
Q |
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| T |
22059034 |
gataatactaaggattaggcttttatagaggcttggagaatatgacatttaggtgaaaggctttgttatggacccttaattgtgatttattaacttaaat |
22058935 |
T |
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| Q |
113 |
tttggtatctagcatgaaattaaggtgttacatcaattaaggtctcatgatatcatttatctgaaaaggtggttacggtggggcatcaatgaagattaaa |
212 |
Q |
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| T |
22058934 |
tttggtatctagcatgaaattaaggtgttacatcaattaaggtctcatgatatcatttatctgaaaaggaggtaatggtggggcatcaataaagattaaa |
22058835 |
T |
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| Q |
213 |
acattggaaaaagtgaaagcttagttgtaagtaaccaaatgtgtttcttttttgttacaatgtaatgtgttgctttcagttggaactaatgcacaatcca |
312 |
Q |
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| T |
22058834 |
acattggaaaaagtgaaagcttagttgtaagtaaccaaatgtgtttcttttttggtacaatgtaatgtgttgctttcagttggaactaatgc----tcca |
22058739 |
T |
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| Q |
313 |
tccattttcagctcaaaatagtggatttggatattgtaaca |
353 |
Q |
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| T |
22058738 |
tccattttcagctcaaaatagtggatttggatattggaaca |
22058698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 413 - 582
Target Start/End: Complemental strand, 22058699 - 22058532
Alignment:
| Q |
413 |
cataaaattgatcttcttgttttaaaacacacacttcacaatattaattgtgcttgttcnnnnnnnnnntataataattgtgcatatttcctcttctctt |
512 |
Q |
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| T |
22058699 |
cataaaattgatcttcttgttttaaaacacacacttcaaaatattaattgtgcttgttcaaaaaaat--tataataattgtgcatatttcctcttctctt |
22058602 |
T |
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| Q |
513 |
aagttggaagagatcttttctcatctcatctaagtggatgctattggattattctactttctttaaggaa |
582 |
Q |
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| T |
22058601 |
aagtcggaagagatcttttctcatctcatccaaatggatgctattgggttattctactttctttaaggaa |
22058532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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