View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_high_13 (Length: 352)
Name: NF14885_high_13
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 39933951 - 39933611
Alignment:
| Q |
16 |
tgaaaatgggaataaaaatttagtgggcctggagcccttgaacaccctggatcctccaacaaatagacatataacaggctaggctnnnnnnntatggacg |
115 |
Q |
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| T |
39933951 |
tgaaaatgggaataaaaatttagtgggcctggagcccttgaacaccctggatccaccaacaaatagacatatagcaggctaggctaaaaaaatatggacg |
39933852 |
T |
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| Q |
116 |
atcttacttttatcacactatatgtttctcgcgtgtcctactgaacggtaattaaccaccgttcagnnnnnnnnctaggtgcctaaagagcaatttcctt |
215 |
Q |
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||| |||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
39933851 |
atcatacttttatctcactatatgtttcttgcgtgtcctactgaatggtaattaaccaccgttcagtttttttactaagtgcctaaagagcaatttcctt |
39933752 |
T |
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| Q |
216 |
ataagggta----nnnnnnnnatcttttgggggcttatgaggaattagggggtccataaaacaattctcaagtaacaatatccgtagaagaaatataaca |
311 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39933751 |
ataagggtattttttttttttatcttttgggggcttatgaggaattagggggtccataaaacaattctcaagtaacaatatccgtagaagaaatataaca |
39933652 |
T |
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| Q |
312 |
cagcatggtctnnnnnnntaaaagacaaattgttttcccac |
352 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
39933651 |
cagcatggtctaaaaaaataaaagacaaattgttttcccac |
39933611 |
T |
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