View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14885_high_14 (Length: 348)

Name: NF14885_high_14
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14885_high_14
NF14885_high_14
[»] chr7 (6 HSPs)
chr7 (32-211)||(38611616-38611795)
chr7 (30-175)||(37735291-37735436)
chr7 (30-184)||(37750760-37750914)
chr7 (265-321)||(37751037-37751093)
chr7 (263-322)||(38611455-38611514)
chr7 (263-320)||(37735550-37735607)
[»] chr2 (1 HSPs)
chr2 (13-64)||(5808691-5808742)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 38611795 - 38611616
Alignment:
Q  32 tttcacttacaagatgtctgccatacaattgggtgcttgagagagctgtaagagcactttgtgcctcctgctgggtaacatactcaacaaaagcatagcc 131  Q
    |||||||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||    
T  38611795 tttcacttaccagatgtctgccatacaagtgggtgcttgagagtgctgtaagagcattttgtgcctcctgctgagtaacatactccacaaaagcaaagcc 38611696  T
Q  132 tctataatttccaaacttcattggcaattttaaacatttaatcttcatggtttcgagccaacaaacatgaatggaaggaa 211  Q
    ||||| |||||||||||||||||||||||||||   |||||||| || |||||  ||||| ||||||||| || ||||||    
T  38611695 tctatgatttccaaacttcattggcaattttaattttttaatctgcacggttttaagccatcaaacatgagtgaaaggaa 38611616  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 37735291 - 37735436
Alignment:
Q  30 agtttcacttacaagatgtctgccatacaattgggtgcttgagagagctgtaagagcactttgtgcctcctgctgggtaacatactcaacaaaagcatag 129  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| ||| |||||||||||||||| ||||||||||| ||||||||| |     
T  37735291 agtttcacttaccagatgtctgccatacaagtgggtacttgagagtgctgtaagtgcattttgtgcctcctgctgagtaacatactccacaaaagcaaat 37735390  T
Q  130 cctctataatttccaaacttcattggcaattttaaacatttaatct 175  Q
    ||||||| |||||||||||||||||| ||| |||||| ||||||||    
T  37735391 cctctatgatttccaaacttcattggtaatcttaaacttttaatct 37735436  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 37750760 - 37750914
Alignment:
Q  30 agtttcacttacaagatgtctgccatacaattgggtgcttgagagagctgtaagagcactttgtgcctcctgctgggtaacatactcaacaaaagcatag 129  Q
    |||||||||||| |||||||| |||||||| ||||| |||||||| |||||||| ||| |||||||||||||||| ||||||||||| ||||||||| |     
T  37750760 agtttcacttaccagatgtcttccatacaagtgggtacttgagagtgctgtaagtgcattttgtgcctcctgctgagtaacatactccacaaaagcaaat 37750859  T
Q  130 cctctataatttccaaacttcattggcaattttaaacatttaatcttcatggttt 184  Q
    ||||||| |||||||||||||||||| ||| |||||| |||||||| || |||||    
T  37750860 cctctatgatttccaaacttcattggtaatcttaaacttttaatctgcacggttt 37750914  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 37751037 - 37751093
Alignment:
Q  265 atcacctgcccaaacgggctaaacaattgtctcagatccttctttgttgcctcaaaa 321  Q
    |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  37751037 atcacctggccaaacgggctaaataattgtctcagatccttctttattgcctcaaaa 37751093  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 38611514 - 38611455
Alignment:
Q  263 taatcacctgcccaaacgggctaaacaattgtctcagatccttctttgttgcctcaaaag 322  Q
    |||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||    
T  38611514 taatcacctggccaaatgggctaaataactgtctcagatccttctttgttgcctcaaaag 38611455  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 37735550 - 37735607
Alignment:
Q  263 taatcacctgcccaaacgggctaaacaattgtctcagatccttctttgttgcctcaaa 320  Q
    |||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  37735550 taatcacctggccaaacgggctaaataattgtctcaggtccttctctgttgcctcaaa 37735607  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 5808691 - 5808742
Alignment:
Q  13 aacaaagggcacaacatagtttcacttacaagatgtctgccatacaattggg 64  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5808691 aacaaagggcacagcatagtttcacttacaagatgtctgccatacaattggg 5808742  T

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