View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14885_high_17 (Length: 291)

Name: NF14885_high_17
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14885_high_17
NF14885_high_17
[»] chr3 (16 HSPs)
chr3 (18-171)||(40943704-40943874)
chr3 (177-258)||(55297343-55297424)
chr3 (170-258)||(22519189-22519276)
chr3 (171-258)||(19895645-19895732)
chr3 (170-258)||(29530561-29530649)
chr3 (187-258)||(19368941-19369012)
chr3 (193-246)||(18682511-18682564)
chr3 (170-258)||(8528103-8528191)
chr3 (198-258)||(28981817-28981877)
chr3 (187-258)||(26102150-26102221)
chr3 (173-255)||(11955528-11955610)
chr3 (187-241)||(35855220-35855274)
chr3 (201-246)||(8393593-8393638)
chr3 (201-258)||(26777850-26777907)
chr3 (170-241)||(22473643-22473714)
chr3 (198-258)||(40831926-40831986)
[»] chr7 (17 HSPs)
chr7 (169-258)||(27737741-27737830)
chr7 (169-258)||(39276611-39276700)
chr7 (170-258)||(21600970-21601058)
chr7 (171-258)||(11840447-11840534)
chr7 (166-258)||(39651148-39651240)
chr7 (171-258)||(21670792-21670879)
chr7 (198-258)||(9143503-9143563)
chr7 (171-255)||(29467751-29467835)
chr7 (173-258)||(17169026-17169111)
chr7 (186-258)||(29684113-29684185)
chr7 (186-258)||(35156995-35157067)
chr7 (187-241)||(44804536-44804590)
chr7 (169-258)||(49146122-49146212)
chr7 (201-246)||(688093-688138)
chr7 (170-255)||(3791478-3791563)
chr7 (170-258)||(48529933-48530021)
chr7 (201-258)||(4848378-4848436)
[»] chr6 (10 HSPs)
chr6 (170-258)||(15045546-15045634)
chr6 (170-258)||(1218517-1218605)
chr6 (173-241)||(4897511-4897579)
chr6 (193-246)||(6969307-6969360)
chr6 (201-258)||(9981259-9981316)
chr6 (170-258)||(18323834-18323922)
chr6 (170-258)||(24443926-24444014)
chr6 (169-258)||(9737752-9737841)
chr6 (201-258)||(4107984-4108041)
chr6 (201-258)||(28573828-28573885)
[»] chr5 (13 HSPs)
chr5 (170-258)||(30140501-30140589)
chr5 (171-258)||(3088031-3088118)
chr5 (171-258)||(33709813-33709900)
chr5 (171-258)||(25698717-25698804)
chr5 (169-258)||(36886968-36887057)
chr5 (169-258)||(41689273-41689362)
chr5 (168-255)||(12592471-12592558)
chr5 (187-258)||(30754425-30754496)
chr5 (201-257)||(12422345-12422401)
chr5 (171-214)||(26602212-26602255)
chr5 (193-255)||(6305452-6305514)
chr5 (193-255)||(43138549-43138611)
chr5 (170-258)||(17643385-17643473)
[»] chr4 (25 HSPs)
chr4 (170-258)||(3821198-3821286)
chr4 (171-258)||(35498532-35498619)
chr4 (170-255)||(39406234-39406319)
chr4 (170-258)||(39716717-39716805)
chr4 (175-258)||(15704115-15704198)
chr4 (170-258)||(50119957-50120045)
chr4 (187-258)||(13171641-13171712)
chr4 (187-258)||(30529278-30529349)
chr4 (170-241)||(51347487-51347558)
chr4 (168-241)||(29712366-29712440)
chr4 (193-246)||(5752473-5752526)
chr4 (170-255)||(24948289-24948374)
chr4 (170-258)||(3757725-3757813)
chr4 (186-258)||(17730448-17730520)
chr4 (166-258)||(36743201-36743293)
chr4 (187-258)||(24547347-24547418)
chr4 (170-255)||(53991554-53991639)
chr4 (170-258)||(20588561-20588649)
chr4 (170-241)||(35716315-35716386)
chr4 (193-255)||(8956938-8957000)
chr4 (193-255)||(8986910-8986972)
chr4 (193-255)||(37349808-37349870)
chr4 (171-225)||(47560251-47560305)
chr4 (201-258)||(12682755-12682812)
chr4 (201-258)||(46104209-46104266)
[»] scaffold0009 (2 HSPs)
scaffold0009 (170-255)||(225434-225519)
scaffold0009 (187-241)||(108563-108617)
[»] chr2 (13 HSPs)
chr2 (166-258)||(10050189-10050281)
chr2 (175-255)||(18096495-18096575)
chr2 (170-258)||(24520865-24520953)
chr2 (170-258)||(28607220-28607308)
chr2 (187-258)||(19486205-19486276)
chr2 (173-255)||(17836969-17837051)
chr2 (170-255)||(32677186-32677271)
chr2 (171-258)||(4292782-4292869)
chr2 (172-258)||(9545775-9545861)
chr2 (173-258)||(2952759-2952844)
chr2 (173-255)||(9920912-9920994)
chr2 (170-258)||(10876571-10876657)
chr2 (201-258)||(19486111-19486168)
[»] chr1 (20 HSPs)
chr1 (170-258)||(47134703-47134791)
chr1 (170-258)||(52306068-52306156)
chr1 (84-171)||(45245200-45245287)
chr1 (170-258)||(16300388-16300476)
chr1 (170-258)||(29188300-29188388)
chr1 (171-255)||(33075659-33075743)
chr1 (170-258)||(33359699-33359787)
chr1 (167-258)||(1367287-1367378)
chr1 (187-258)||(46626324-46626395)
chr1 (170-255)||(22198910-22198995)
chr1 (170-255)||(29844884-29844969)
chr1 (170-258)||(4890097-4890185)
chr1 (170-258)||(17364603-17364691)
chr1 (170-258)||(19322344-19322432)
chr1 (168-241)||(1826790-1826863)
chr1 (198-258)||(19400758-19400818)
chr1 (171-255)||(42678374-42678458)
chr1 (192-255)||(38894776-38894839)
chr1 (201-258)||(5426246-5426303)
chr1 (198-258)||(51971272-51971331)
[»] chr8 (13 HSPs)
chr8 (169-258)||(36776402-36776491)
chr8 (192-258)||(41972977-41973043)
chr8 (170-258)||(24053913-24054001)
chr8 (186-258)||(25346049-25346121)
chr8 (186-258)||(42245732-42245804)
chr8 (171-258)||(18378802-18378889)
chr8 (170-224)||(41152667-41152721)
chr8 (187-255)||(40587695-40587763)
chr8 (198-258)||(40616094-40616154)
chr8 (186-258)||(41534248-41534320)
chr8 (198-258)||(44389005-44389065)
chr8 (193-255)||(8760723-8760785)
chr8 (193-255)||(25836268-25836330)
[»] scaffold0057 (1 HSPs)
scaffold0057 (170-258)||(20579-20667)
[»] scaffold0385 (1 HSPs)
scaffold0385 (187-255)||(8303-8371)
[»] scaffold0759 (1 HSPs)
scaffold0759 (193-246)||(5903-5956)
[»] scaffold0051 (1 HSPs)
scaffold0051 (201-258)||(62092-62149)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 40943704 - 40943874
Alignment:
Q  18 catgatgaatacaaactacaatgacaggcaacaaggaatacgacgacgagagacaataaagac-----------------acagttagtccgaaaagatg 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||                 || ||| |||| ||||||||    
T  40943704 catgatgaatacaaactacaatgagaggcaacaaggaatacgacgacgagagacaacaaagacttaaaggagttgtttacacggttggtcctaaaagatg 40943803  T
Q  101 tagatggggttgcagcaatatagaagtggtaagatggtagcggaaaccatcagagacatgggttaaaacat 171  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||||    
T  40943804 tagatggggttgcagcaatatagaagtggtaagatggtggcggaaaccatcgaagacgtgggttaaaacat 40943874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 55297424 - 55297343
Alignment:
Q  177 tacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||| ||||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  55297424 tactcctataaaaagaaatgtccctcgaatttaccattttacccctataaagggtaatttggtaaattattaattggttgag 55297343  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 22519189 - 22519276
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||||||  ||||||| || || |||||||||||||| ||||||||||| ||| ||||| |||||||| ||||||||||||    
T  22519189 atctatatacttctattaaaagaa-tgtccattgaatttaccattttgcccctataaggggcaatttagtaaattattaattggttgag 22519276  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 19895732 - 19895645
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| || | ||  ||||| || |||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||    
T  19895732 tctatatacttatatagaagaaaatgtccattgaatttaccattttgcccttataaagggcaatttggtaaattagtaattggttgag 19895645  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 29530649 - 29530561
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  ||  |||||||||| ||||||||||||||||| || |||||||| ||| ||||||||||  |||| ||||||||||    
T  29530649 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 29530561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 19369012 - 19368941
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||| ||||||| ||||||||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  19369012 aaaagaaatgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19368941  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 18682511 - 18682564
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattac 246  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  18682511 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 18682564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 8528191 - 8528103
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  ||  |||||||||| ||||||||||||||||| || |||||||| ||| ||||||||||  || | ||||||||||    
T  8528191 atctatatactaataagaaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaatatatttattggttgag 8528103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 28981877 - 28981817
Alignment:
Q  198 cccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||   ||||||||||||||    
T  28981877 cccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 28981817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 26102221 - 26102150
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||| || |||||||||||||| |||||||||||  |||||||||||||  | || ||||||||||    
T  26102221 aaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggttgag 26102150  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 11955610 - 11955528
Alignment:
Q  173 tatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    ||||||||| ||  |||||||||| ||| || |||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  11955610 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 11955528  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 35855220 - 35855274
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaa 241  Q
    |||||||||| ||||| ||||||||||| ||||||||||| ||| ||||||||||    
T  35855220 aaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 35855274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 8393593 - 8393638
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattac 246  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||    
T  8393593 ttgaatttaccattttgcccctataaggggcaatttggtaaattac 8393638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 26777907 - 26777850
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||||||||| ||||||||| | ||| ||||||||||||||| |||||||||||    
T  26777907 ttgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 26777850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 22473643 - 22473714
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaa 241  Q
    |||||||||||| ||  ||||||||||  || || |||||||||| ||||||||||| ||| ||||||||||    
T  22473643 atctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 22473714  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 40831986 - 40831926
Alignment:
Q  198 cccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||||||| ||| ||||||| ||  |||| |||||  |||||||||||||||    
T  40831986 cccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggttgag 40831926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 27737830 - 27737741
Alignment:
Q  169 catctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||    
T  27737830 catctatatacttctataaaaagaaaagtcccttgaatttaccattttacccctataaaggataatttggtaaattactaattggttgag 27737741  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 39276611 - 39276700
Alignment:
Q  169 catctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||| ||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  39276611 catctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgag 39276700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 21601058 - 21600970
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||||||  |||||||||| || |||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||    
T  21601058 atctatatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 21600970  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 11840534 - 11840447
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||||  |||||||||| || |||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||    
T  11840534 tctatatacttctattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 11840447  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 39651240 - 39651148
Alignment:
Q  166 aaacatctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||    
T  39651240 aaacttctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttgag 39651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 21670879 - 21670792
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| ||  |||||||||| ||||||||||||| ||| |||||||||||||| |||||||||||||||| |||| ||||||    
T  21670879 tctatatacttatattaaaagaaatgtcccttgaatttactattttgcccctataaaggataatttggtaaattacaaatttgttgag 21670792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 9143503 - 9143563
Alignment:
Q  198 cccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||| ||||||    
T  9143503 cccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatttgttgag 9143563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 29467751 - 29467835
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    ||||||||||| ||  |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  29467751 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 17169026 - 17169111
Alignment:
Q  173 tatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||| ||  |||||||||| || |||||||||||||| ||||||||| ||||| |||||||||||||| | ||||| ||||    
T  17169026 tatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 17169111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 29684185 - 29684113
Alignment:
Q  186 aaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  |||||||||||||||| | ||||||||| ||| ||||||||||  |||||||||||||||    
T  29684185 aaaaagaaatgtgccttgaatttaccattttacccctataaggggcaatttggtaatctactaattggttgag 29684113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 35157067 - 35156995
Alignment:
Q  186 aaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| | ||||||||||||||| ||||||||||| ||| ||||||||||  |||| || |||||||    
T  35157067 aaaaagaaatgtcacttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggttgag 35156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 44804536 - 44804590
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaa 241  Q
    |||||||||| ||||||||||||||||| || |||||||| ||| ||||||||||    
T  44804536 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaa 44804590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 49146212 - 49146122
Alignment:
Q  169 catctatatacttctacaaaaaga-aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||  || ||||||  |||| || |||| ||||||||| ||||||||| | ||| ||||||||||||||| |||||||||||    
T  49146212 catctatatactaatataaaaagttaatgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 49146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 688093 - 688138
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattac 246  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||    
T  688093 ttgaatttaccattttgcccctataaggggcaatttggtaaattac 688138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 3791478 - 3791563
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||||| ||  |||||||||| ||  || |||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  3791478 atctatatacttatattaaaagaaatgtcctatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 48530021 - 48529933
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| || ||||| |||||||| |||||||||   ||| |||||||||||||| | ||||| ||||    
T  48530021 atctatatacttatattaaaagaaatgtcctttgaaattaccattttgcccctattgggggcaatttggtaaattaattattggctgag 48529933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 4848378 - 4848436
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattac-taattggttgag 258  Q
    |||| ||||||||| ||||||||| | |||||||||||||||||||  |||||||||||    
T  4848378 ttgattttaccattttgcccctatgaggggtaatttggtaaattacaaaattggttgag 4848436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 15045634 - 15045546
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  15045634 atctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaagggtaatttggtaaattacaaatttgttgag 15045546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 1218517 - 1218605
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| ||||| |||||||||||||| | ||||| ||||    
T  1218517 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 1218605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 4897579 - 4897511
Alignment:
Q  173 tatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaa 241  Q
    ||||||||| ||  |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||    
T  4897579 tatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 4897511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 6969360 - 6969307
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattac 246  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  6969360 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 6969307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 9981316 - 9981259
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||||| | ||||||||| ||| ||||||||||||| |||||||||||||    
T  9981316 ttgaatttaccattttacccctataaggggcaatttggtaaattgctaattggttgag 9981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 18323834 - 18323922
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| ||  | |||||||||||||| | ||||| ||||    
T  18323834 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaaaagcaatttggtaaattaattattggctgag 18323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 24443926 - 24444014
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||  || |||||||||||||| ||||||||| | ||| |||||||||||||| | ||||| ||||    
T  24443926 atctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 24444014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 9737841 - 9737752
Alignment:
Q  169 catctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||  ||  |||||||||| ||||||||||||||||| || |||||||| ||| |||||| |||  || | ||||||||||    
T  9737841 catctatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggttgag 9737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 4107984 - 4108041
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||||||||| | ||||||| | ||| ||||||||||||||| |||||||||||    
T  4107984 ttgattttaccatttttcccctatgaggggcaatttggtaaattacaaattggttgag 4108041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 28573885 - 28573828
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||||||||| ||||||||  | ||| ||||||||||||||| |||||||||||    
T  28573885 ttgattttaccattttgcccctaggaggggcaatttggtaaattacaaattggttgag 28573828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 30140501 - 30140589
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  30140501 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttgag 30140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 3088118 - 3088031
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| ||  ||||| |||| ||||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||    
T  3088118 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 3088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 33709900 - 33709813
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| ||  ||||  |||| ||||||||||||||||| | ||||||||||||| |||||||||||||| ||||||||||||    
T  33709900 tctatatacttatattaaaattaatgtcccttgaatttaccattttacccctataaagggcaatttggtaaattagtaattggttgag 33709813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 25698804 - 25698717
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| | ||| |||||||||||||| | ||||||||||    
T  25698804 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 25698717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 36887057 - 36886968
Alignment:
Q  169 catctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||  ||  |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| |||| |||||    
T  36887057 catctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattgattgag 36886968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 41689273 - 41689362
Alignment:
Q  169 catctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| | ||| |||||||||||||| | ||||| ||||    
T  41689273 catctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattatgggcaatttggtaaattaattattggctgag 41689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 12592558 - 12592471
Alignment:
Q  168 acatctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||||||| || ||||||||||| ||| ||||||||||| | | ||||||||| ||| ||||||||||  |||| |||||||    
T  12592558 acatctatatacttatataaaaagaaatgtcccatgaatttaccagtttacccctataaggggcaatttggtaatctacttattggtt 12592471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 30754425 - 30754496
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||| || |||||||||||||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  30754425 aaaagaaatgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30754496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 12422401 - 12422345
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttga 257  Q
    |||| ||||||||| ||||||||||| ||| ||||||||||  ||||||||||||||    
T  12422401 ttgattttaccattttgcccctataaggggcaatttggtaatctactaattggttga 12422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 26602255 - 26602212
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccatt 214  Q
    ||||||||||| || ||||||||||| |||||||||||||||||    
T  26602255 tctatatacttatataaaaagaaatgtcccttgaatttaccatt 26602212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 6305514 - 6305452
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||| ||| ||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  6305514 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 6305452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 43138611 - 43138549
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||| ||| ||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  43138611 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 43138549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 17643473 - 17643385
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  ||  |||| ||||| |||||||||||| |||| ||||| ||||| ||| ||||||||||  || | ||||||||||    
T  17643473 atctatatactaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggttgag 17643385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 3821286 - 3821198
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  ||||| |||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||    
T  3821286 atctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 3821198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 35498619 - 35498532
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||  || ||||||||||| |||||||||||| |||| ||||||||||||||  |||||||||||||||||||||||||||    
T  35498619 tctatatactaatataaaaagaaatggcccttgaatttatcattttgcccctataaaggacaatttggtaaattactaattggttgag 35498532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 39406319 - 39406234
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||||| || |||||||||||  ||||||||||||||||  |||||||||| ||||||||||||||  |||| |||||||    
T  39406319 atctatatacttatataaaaagaaatgttccttgaatttaccatttagcccctataaggggtaatttggtaatctacttattggtt 39406234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 39716805 - 39716717
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| | ||| |||||||||||||| | ||||||||||    
T  39716805 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 39716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 15704115 - 15704198
Alignment:
Q  175 tatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||| || |||||| ||||  | || ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||    
T  15704115 tatacttatataaaaagtaatgttctttaaatttaccattttgcccctataaggggaaatttggtaaattactaattggttgag 15704198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 50120045 - 50119957
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  ||  ||||| |||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  50120045 atctatatactaataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 50119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 13171641 - 13171712
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  13171641 aaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 13171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 30529349 - 30529278
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||  ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  30529349 aaaagaaatatcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30529278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 51347487 - 51347558
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaa 241  Q
    |||||||||||  ||  |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||    
T  51347487 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 51347558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 29712366 - 29712440
Alignment:
Q  168 acatctatatacttctac-aaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaa 241  Q
    |||||||||||||| ||  ||||||||||| ||||| ||||||||||| ||||||||||| ||| ||||||||||    
T  29712366 acatctatatacttatattaaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaa 29712440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 5752473 - 5752526
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattac 246  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  5752473 aatgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattac 5752526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 24948374 - 24948289
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||||| || ||||||||||| || |||||||||||||| ||| ||||||| ||| ||||||| ||  |||| |||||||    
T  24948374 atctatatacttatataaaaagaaatgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggtt 24948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 3757725 - 3757813
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  ||  ||||||||||  | |||||||||||||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  3757725 atctatatactaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 3757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 17730448 - 17730520
Alignment:
Q  186 aaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  | |||||||||||||| ||| ||||||| ||| ||||||||||  |||||||||||||||    
T  17730448 aaaaagaaatgtgctttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggttgag 17730520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 36743293 - 36743201
Alignment:
Q  166 aaacatctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||||||  ||  |||||||||| ||||| ||||||||||| || | |||||| ||| ||||||||||  |||| ||||||||||    
T  36743293 aaacatctatatactaataagaaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggttgag 36743201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 24547347 - 24547418
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||| ||||||||||||||||| || |||||||| ||| ||||||||||  || | ||||||||||    
T  24547347 aaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttgag 24547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 53991639 - 53991554
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||||| ||  ||||||||||  || || |||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  53991639 atctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 53991554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 20588561 - 20588649
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  ||  |||||||||| |||||||||| |||||| |||| |||||| ||| ||||||||||   ||| ||||||||||    
T  20588561 atctatatactaataagaaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggttgag 20588649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 35716386 - 35716315
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaa 241  Q
    |||||||||||| ||  ||||||||||  || || |||||||||| ||||||||||| ||| ||||||||||    
T  35716386 atctatatacttatattaaaagaaatgttccatggatttaccattttgcccctataaggggcaatttggtaa 35716315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 8956938 - 8957000
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||| ||| ||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  8956938 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8957000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 8986910 - 8986972
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||| ||| ||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  8986910 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 37349808 - 37349870
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||| ||| ||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  37349808 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 37349870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 47560305 - 47560251
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctata 225  Q
    ||||||||||| ||  ||||| |||| ||||||||||||||||| ||||||||||    
T  47560305 tctatatacttatattaaaagtaatgtcccttgaatttaccattttgcccctata 47560251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 12682812 - 12682755
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||||||||| ||||||||| | ||| ||||||||||||||  |||||||||||    
T  12682812 ttgattttaccattttgcccctatgaggggcaatttggtaaattataaattggttgag 12682755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 46104209 - 46104266
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||||||||| |||||| || | ||| ||||||||||||||| |||||||||||    
T  46104209 ttgattttaccattttgccccaatgaggggcaatttggtaaattacaaattggttgag 46104266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 225434 - 225519
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||||| ||  |||||||||| || |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  225434 atctatatacttatattaaaagaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 225519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 108563 - 108617
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaa 241  Q
    |||||||||| ||||||||||||||||| || ||| |||| ||||||||||||||    
T  108563 aaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaa 108617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 10050281 - 10050189
Alignment:
Q  166 aaacatctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| | ||| |||||| ||||||||||||||||||||    
T  10050281 aaacatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttgag 10050189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 255
Target Start/End: Original strand, 18096495 - 18096575
Alignment:
Q  175 tatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    ||||||| || ||||||||||| || |||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||    
T  18096495 tatacttatataaaaagaaatgtcctttgaatttaccattttgcccctataaggggtaatttggcaaattattaattggtt 18096575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 24520865 - 24520953
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| || ||||||||||| ||||||||||||  ||| |||| |||||| | | |||||||||||||||||||||||||||    
T  24520865 atctatatacttatataaaaagaaatgtcccttgaatttataattttgcctctataaggagcaatttggtaaattactaattggttgag 24520953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 28607220 - 28607308
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||| ||||| || |||||||||||||| || |||||||| ||| ||||||||||||||| |||||||||||    
T  28607220 atctatatacttatattaaaataaatgtccattgaatttaccattttgtccctataaggggcaatttggtaaattacaaattggttgag 28607308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 19486205 - 19486276
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  19486205 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19486276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 17836969 - 17837051
Alignment:
Q  173 tatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    ||||||||| ||  |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  17836969 tatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 17837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 32677271 - 32677186
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||||| ||  |||| ||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  32677271 atctatatacttatattaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 32677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 4292869 - 4292782
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| ||  |||||||||| || |||||||||||||| ||| ||||| ||||| |||||||||||||| | ||||| ||||    
T  4292869 tctatatacttatattaaaagaaatgtcctttgaatttaccattttgctcctattaagggcaatttggtaaattaattattggctgag 4292782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 9545861 - 9545775
Alignment:
Q  172 ctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||| ||  |||||||||| || |||||||||||||| ||||||||| | ||| |||||||||||||| | ||||| ||||    
T  9545861 ctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 9545775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 2952759 - 2952844
Alignment:
Q  173 tatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||| ||  |||||||||| || |||||||||||||| ||||||||| | ||| |||||||||||||| | ||||| ||||    
T  2952759 tatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 2952844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 9920994 - 9920912
Alignment:
Q  173 tatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    ||||||||| ||  |||||||||| ||| || |||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  9920994 tatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 9920912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 10876657 - 10876571
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  ||  |||||||||| ||||||||||||||||| ||||||  ||| ||| ||||||||||  |||| ||||||||||    
T  10876657 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccc--taaggggcaatttggtaatctacttattggttgag 10876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 19486168 - 19486111
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||| |||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  19486168 ttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttgag 19486111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 47134703 - 47134791
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| || |||| | |||| || |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||    
T  47134703 atctatatacttatataaaaggtaatgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 47134791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 52306068 - 52306156
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| || ||||||||||  ||||| ||||||||||| ||||||||||| ||| |||||| ||||||||||||||||||||    
T  52306068 atctatatacttatataaaaagaaatatccctttaatttaccattttgcccctataaggggcaatttgataaattactaattggttgag 52306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 45245200 - 45245287
Alignment:
Q  84 gttagtccgaaaagatgtagatggggttgcagcaatatagaagtggtaagatggtagcggaaaccatcagagacatgggttaaaacat 171  Q
    |||||||| |||| |||||||||||||||||| |||||||||||||| ||||||  |||||||||||  ||||| |||||||||||||    
T  45245200 gttagtcctaaaacatgtagatggggttgcagtaatatagaagtggtgagatgggggcggaaaccattggagacgtgggttaaaacat 45245287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 16300388 - 16300476
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  ||||  |||| ||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||    
T  16300388 atctatatacttatattaaaattaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttgag 16300476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 29188388 - 29188300
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| ||||| |||||||||||||| | ||||| ||||    
T  29188388 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 29188300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 33075743 - 33075659
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    ||||||||||| ||  |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  33075743 tctatatacttatattaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 33075659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 33359699 - 33359787
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| ||||| |||||||||||||| | ||||| ||||    
T  33359699 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 33359787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 1367287 - 1367378
Alignment:
Q  167 aacatctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| | ||| |||||||||||||| | ||||| ||||    
T  1367287 aacatctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 1367378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 46626395 - 46626324
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  46626395 aaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 46626324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 22198995 - 22198910
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||||| ||  |||||||||| |||||||||||| |||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  22198995 atctatatacttatattaaaagaaatgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggtt 22198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 255
Target Start/End: Complemental strand, 29844969 - 29844884
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||||| ||  |||||||||| ||| || |||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  29844969 atctatatacttatattaaaagaaatgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 4890097 - 4890185
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| || |||||||||||||| |||| |||| | ||| |||||||||||||| | ||||| ||||    
T  4890097 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcctctattaggggcaatttggtaaattaattattggctgag 4890185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 17364691 - 17364603
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||  || |||||||||||||| ||||||||| | ||| |||||||||||||| | ||||| ||||    
T  17364691 atctatatacttatattaaaagaaatatcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 17364603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 19322432 - 19322344
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  ||  |||| ||||| ||||||||||||||||| ||||||||||| ||| |||||||||   |||| ||||||||||    
T  19322432 atctatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggttgag 19322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 1826790 - 1826863
Alignment:
Q  168 acatctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaa 241  Q
    |||||||||||||| ||  ||||| |||| ||||||||||||||||| || | |||||| ||| ||||||||||    
T  1826790 acatctatatacttatattaaaagtaatgtcccttgaatttaccattttggctctataaggggcaatttggtaa 1826863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 19400758 - 19400818
Alignment:
Q  198 cccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||||||| ||||| ||||| |||||||| |||||  || ||||||||||||    
T  19400758 cccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggttgag 19400818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 42678374 - 42678458
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    ||||||||||| || ||||||||||| ||| ||||||||||||| |  |||||||| ||| |||||| |||  |||| |||||||    
T  42678374 tctatatacttatataaaaagaaatgtcccatgaatttaccattttatccctataaggggcaatttgataatctacttattggtt 42678458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 38894776 - 38894839
Alignment:
Q  192 aaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    ||||| || |||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  38894776 aaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 38894839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 5426246 - 5426303
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||||||||| ||||| || || ||| ||||||||||||||| |||||||||||    
T  5426246 ttgattttaccattttgcccttagaaggggcaatttggtaaattacaaattggttgag 5426303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 51971331 - 51971272
Alignment:
Q  198 cccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||| |||||||| || |||||||| ||||||||||||||  || ||||||||||||    
T  51971331 cccttgaagttaccattttgtccctataa-gggtaatttggtaatctattaattggttgag 51971272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 36776402 - 36776491
Alignment:
Q  169 catctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||  ||  |||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||| ||||||||||    
T  36776402 catctatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 36776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 41972977 - 41973043
Alignment:
Q  192 aaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||| ||||||||||||||||| ||||||||||| ||| ||||||||||  |||||||||||||||    
T  41972977 aaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggttgag 41973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 24053913 - 24054001
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||  ||  |||||||||| ||||||||||||||||| ||| ||||||| ||| ||||||||||  |||| ||||||||||    
T  24053913 atctatatactaataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttgag 24054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 25346049 - 25346121
Alignment:
Q  186 aaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| || |||||||||||||| |||| |||||| ||| ||||||||||  |||| ||||||||||    
T  25346049 aaaaagaaatgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttgag 25346121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 42245804 - 42245732
Alignment:
Q  186 aaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| | |||||||| |||||| ||||||||||| |||||||||| |||  |||| ||||||||||    
T  42245804 aaaaagaaatgtcacttgaattcaccattttgcccctataaggggtaatttgataatctacttattggttgag 42245732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 18378889 - 18378802
Alignment:
Q  171 tctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||| ||  |||||||||| || ||||||||| |||| |||| |||| | ||| |||||||||||||| | ||||||||||    
T  18378889 tctatatacttatattaaaagaaatgtcctttgaatttatcattttgcctctattaggggcaatttggtaaattaattattggttgag 18378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 41152667 - 41152721
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctat 224  Q
    |||||||||||| || ||||||||||| ||||||||||||||||| || ||||||    
T  41152667 atctatatacttatataaaaagaaatgtcccttgaatttaccattttgtccctat 41152721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 40587763 - 40587695
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||| ||||| || |||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  40587763 aaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 40587695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 40616154 - 40616094
Alignment:
Q  198 cccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||||||| ||| |||||||  || ||||||||||  |||||||||||||||    
T  40616154 cccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggttgag 40616094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 41534320 - 41534248
Alignment:
Q  186 aaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||| ||||| ||| ||||||||||||| ||| ||||||| ||  |||||| ||||||| ||||||||||||    
T  41534320 aaaaataaatgtcccatgaatttaccattttgctcctataagggacaatttgataaattattaattggttgag 41534248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 44389065 - 44389005
Alignment:
Q  198 cccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    ||||||||||||||||| | ||| ||||| ||||||||||||||  || ||||||||||||    
T  44389065 cccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggttgag 44389005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 8760723 - 8760785
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||| ||| ||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  8760723 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 25836330 - 25836268
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||| ||| ||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  25836330 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 25836268  T

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Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 20667 - 20579
Alignment:
Q  170 atctatatacttctacaaaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||||||||||| ||  |||||||||| || |||||||||||||| ||||||||| | ||| |||||||||||||| | ||||| ||||    
T  20667 atctatatacttatattaaaagaaatgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 20579  T

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Target: scaffold0385 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 8371 - 8303
Alignment:
Q  187 aaaagaaatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggtt 255  Q
    |||||||||| ||| ||||||||||||| ||||||||||| ||| ||||||||||  |||| |||||||    
T  8371 aaaagaaatgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8303  T

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Target: scaffold0759 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 5956 - 5903
Alignment:
Q  193 aatgccccttgaatttaccattgtgcccctataaagggtaatttggtaaattac 246  Q
    |||| ||| ||||||||||||| ||||||||||| ||| |||||||||||||||    
T  5956 aatgtcccatgaatttaccattttgcccctataaggggcaatttggtaaattac 5903  T

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Target: scaffold0051 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 62092 - 62149
Alignment:
Q  201 ttgaatttaccattgtgcccctataaagggtaatttggtaaattactaattggttgag 258  Q
    |||| ||||||||| ||||||||| | ||| ||||||||||||||| |||||||||||    
T  62092 ttgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 62149  T

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