View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_high_2 (Length: 558)
Name: NF14885_high_2
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 14415660 - 14416180
Alignment:
| Q |
19 |
agtatgatccttgacactttcatttttaatnnnnnnnnnttgaatgtttcaaatgaaacggggtgttcaagtttccaccgagttggaacaaaggtgctac |
118 |
Q |
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| T |
14415660 |
agtatgatccttgacactttcatttt-aataaaaaaaaattgaatgtttcaaatgaaatggggtgttcaagtttccaccgagttggaacaaaggtgctac |
14415758 |
T |
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| Q |
119 |
aaccttttataagaaaatgtttgcacttataccattgaatagtatgtttgattgaggtagccatatatagcaagctctaaaataagttaaattgggtttg |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14415759 |
aaccttttataacaaaatgtttgcacttataccattgaatagtatgtttgattgaggtagccatatatagcaagctctaaaataagttaaattgggtttg |
14415858 |
T |
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| Q |
219 |
aatgatgcaaactagttttgacttttgagggtgcatatatgcaatgttacacatgttgtctatttatagtgagtctttatttttattggttgctttctaa |
318 |
Q |
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| T |
14415859 |
aatgatgcaaactagttttgacttttgagggtgcatatatgcaatgttacacatgttgtctatttatagtgagtctttatttttattggttgctttcgaa |
14415958 |
T |
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| Q |
319 |
tccgttgaggtagccatatttaacgaatgagtcttaacccatgttttttataaacnnnnnnnnctcctatttaagctatatttgaataaaacatattgtt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14415959 |
tccgttgaggtagccatatttaacgaatgagtcttaacccatgttttttataaacttttttttctcctatttaagctatatttgaataaaacatattgtt |
14416058 |
T |
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| Q |
419 |
tnnnnnnnnnntgcagagtttctcgatcattttcattttgttgtgtattcagatcatttgcctgtctcttaactatataaacttgagaggagtcgtttat |
518 |
Q |
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| T |
14416059 |
taaaaaaaaaatgcagagtttctcgatcattttcattttgttgtgtattcagatcatttgcctgtctcttaac--tataaacttgagaggagtcgtttat |
14416156 |
T |
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| Q |
519 |
taatattgtctcaatcacattcat |
542 |
Q |
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| T |
14416157 |
taatattgtctcaatcacattcat |
14416180 |
T |
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