View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_high_20 (Length: 273)
Name: NF14885_high_20
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_high_20 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 29 - 265
Target Start/End: Complemental strand, 3209478 - 3209242
Alignment:
| Q |
29 |
gcatcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccatcatcgctgactagttcttgctcttcttcttc |
128 |
Q |
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| T |
3209478 |
gcatcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccgtcatcgctgcctagttcttgctcttcttcttc |
3209379 |
T |
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| Q |
129 |
cgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcg |
228 |
Q |
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| T |
3209378 |
catgaccgccccctcgtcctcttccgtttcaccatcgacgaccgcttactcctcctcctactcaccactctcaccgtcgtagctcttgtcttcaccggcg |
3209279 |
T |
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| Q |
229 |
tttggcttaacgtcctcgtgagtcgtgtctgtgctgc |
265 |
Q |
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| T |
3209278 |
tttggcttaacgtcctcgtgagtcgtgttggtgctgc |
3209242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 109313 - 109081
Alignment:
| Q |
29 |
gcatcaactacaccattaatcttatcccaacttacaactctctcccttcaacctcaacttcctcgccatcatcgctgactagttcttgctcttcttcttc |
128 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
109313 |
gcatcaactacatcattaattttatcccaacttacaactctctcccttcaacctcaacttcctcgccgtcatcgctgcctagttcttgctcttcttcttc |
109214 |
T |
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| Q |
129 |
cgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcg |
228 |
Q |
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| T |
109213 |
catgaccg-cccttcgtcctcttccgtttcaccatcgacgacctcttcctcctcctcctactcaccgctctcaccgtcgtagctcttgtcttcaccggcg |
109115 |
T |
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| Q |
229 |
tttggcttaacgtcctcgtgagtcgtgtctgtgct |
263 |
Q |
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| T |
109114 |
-ttggcttaacgtcctcgtgagtcgtgtcggtgct |
109081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 110 - 244
Target Start/End: Original strand, 31283114 - 31283248
Alignment:
| Q |
110 |
gttcttgctcttcttcttccgtgaccgccccctcgtcctcttccgtttcaccatcgacgactgattcctcctcctcctactcaccgctctcaccgtcgta |
209 |
Q |
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||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||| | ||||||||| |||||||| || | |||||| |||| |
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| T |
31283114 |
gttcttgcttttcttcttccgtgaccgccccgtcgtcctcttccgtttcaccattgatgaccgcttcctcctcgtcctactctccaccctcaccatcgtc |
31283213 |
T |
|
| Q |
210 |
gctcttgtcttcaccggcgtttggcttaacgtcct |
244 |
Q |
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| T |
31283214 |
gctcttgtcttcaccggcgtttggcttaacgtcct |
31283248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 31282834 - 31282882
Alignment:
| Q |
41 |
ccattaatcttatcccaacttacaactctctcccttcaacctcaacttc |
89 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
31282834 |
ccattaatcctactccaacttacaactctctcccttcaacctcaacttc |
31282882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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