View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_high_23 (Length: 247)
Name: NF14885_high_23
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 40805551 - 40805804
Alignment:
| Q |
9 |
ataaagaagaaaataacaacccagtcaaattcatataaac---------------taaattggcaaaaacaacaacaatagaggaattaaccgattttga |
93 |
Q |
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| T |
40805551 |
ataaagaagaaaataacaacccagtcaaattcatataaactaaatgctctaaaactaaattggcaaaaacaacaacaatagaggaactaaccgattttga |
40805650 |
T |
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| Q |
94 |
tggctctttgtcgttttccatacagcctaagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatcat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805651 |
tggctctttgtcgttttccatacagcctaagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatcat |
40805750 |
T |
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| Q |
194 |
tgtataacaaaaggagattattataattgacaaattacaaataaatatggtata |
247 |
Q |
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| T |
40805751 |
tgtataacaaaaggagattattataattgacagattacaaataaatatggtata |
40805804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 246
Target Start/End: Complemental strand, 9519094 - 9518947
Alignment:
| Q |
98 |
tctttgtcgttttccatacagcctaagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatcattgta |
197 |
Q |
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| T |
9519094 |
tctttgccgatttccatattgcataggcatagtggaattatctcacttctaagaagaaaatctatgctttctttggtgttaacctgtgactatca-tgta |
9518996 |
T |
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| Q |
198 |
taacaaaaggagattattataattgacaaattacaaataaatatggtat |
246 |
Q |
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| T |
9518995 |
cgacagaaggaaattattataattaacaaaggaaaaataaatatggtat |
9518947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 9519196 - 9519160
Alignment:
| Q |
12 |
aagaagaaaataacaacccagtcaaattcatataaac |
48 |
Q |
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| T |
9519196 |
aagaagaaaataacaaccaagtcaaattcatataaac |
9519160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 24127695 - 24127789
Alignment:
| Q |
122 |
aagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatcattgtat-aacaaaaggagattatta |
216 |
Q |
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| T |
24127695 |
aagcagagtggaattatctcacttaaaataaggtaacccaagacttctttggtgttaacctgtgaatatca-agtatcaacaaaaggaaattatta |
24127789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 192
Target Start/End: Original strand, 5116898 - 5116968
Alignment:
| Q |
122 |
aagcatagtggaattatttcatttggaagaaggaaactcatgacttctttggtgttaacctgtgaatatca |
192 |
Q |
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| T |
5116898 |
aagcatagtgaaattatctcacttgagagatagaaacctatggcttctttggtgttaacctgtgaatatca |
5116968 |
T |
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