View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_10 (Length: 399)
Name: NF14885_low_10
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 3641466 - 3641254
Alignment:
| Q |
19 |
tgacatttctaaaatcggttctttaagttcatgtcattaatcttcgattttttacactaatataacaattgaaatactcatcatttgcatggatggaata |
118 |
Q |
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| T |
3641466 |
tgacatttctaaaatcggttctttaagttcatgtcattaatcttcgattttttacactaatataacaattgaaatactcatcatttgcatggatggaata |
3641367 |
T |
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| Q |
119 |
taaatatttagaacttaattatatttatgcctcactctcatatgagagattcattataaagagcagaattctcaagcatgctaatgcacgaccaataaca |
218 |
Q |
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| T |
3641366 |
taaatatttaggacttaattatatttatgcctcactctcatatgagagattcattataaagagcagaattctcaagcatgctaatgcacgaccaatagca |
3641267 |
T |
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| Q |
219 |
ttcttcctggtac |
231 |
Q |
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||||||||||||| |
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| T |
3641266 |
ttcttcctggtac |
3641254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 280 - 397
Target Start/End: Complemental strand, 3641204 - 3641087
Alignment:
| Q |
280 |
ctacttaccataataggaatatcccgctccaaagcacaggacttcaggtgacgtgatatcgtggccttttcttcaactacaatagctcccatcaaagtcc |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641204 |
ctacttaccataataggaatatcccgctccaaagcacaggacttcaggtgacgtgatatcgtggccttttcttcaactacaatagctcccatcaaagtcc |
3641105 |
T |
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| Q |
380 |
tttcttcatctgtgctcc |
397 |
Q |
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| T |
3641104 |
tttcttcatcggtgctcc |
3641087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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