View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14885_low_11 (Length: 381)
Name: NF14885_low_11
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 60 - 365
Target Start/End: Complemental strand, 45642644 - 45642331
Alignment:
| Q |
60 |
tcaacgctaacaccgtcaattctgacacatcaacgccaaatccatgacccatcaacgccaattccgaaa-cctattccccatcgttattcatttcagact |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
45642644 |
tcaacgctaacaccgtcaattctgacacatcaacgccaaatccatgacccatcaacgccaattccaaaaccctattccccatcgttattcatttcagact |
45642545 |
T |
|
| Q |
159 |
a------aacaacaacaacaaagaacttgtagttattcaaactcagatctaacgattccaaacccgtaaacgaagtacacgtgccgaacacagctccaca |
252 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45642544 |
aaacaacaacaacaacaacaaagaacttgtagttattcaaactcagatctaacgattccaaacacgtaaacgaagtacacgtgccgaacacagctccaca |
45642445 |
T |
|
| Q |
253 |
agacacgtcagta-nnnnnnnggtaatgtaccacgtacctttgtgcacatatttcagtccaccacagtttgtcgtcaaagcgtgtggtttcgttggagag |
351 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45642444 |
agacacgtcagtattttttttggtaatgtaccacgtacctttgtgcacatatttcagtccaccacagtttgtcgtcaaagcatgtggtttcgttggagag |
45642345 |
T |
|
| Q |
352 |
agaatggaggtgca |
365 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
45642344 |
agaatggaggtgca |
45642331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Original strand, 43437303 - 43437339
Alignment:
| Q |
183 |
agttattcaaactcagatctaacgattccaaacccgt |
219 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
43437303 |
agttattcgaactcagatctaacaattccaaacccgt |
43437339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University