View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14885_low_12 (Length: 363)

Name: NF14885_low_12
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14885_low_12
NF14885_low_12
[»] chr7 (30 HSPs)
chr7 (145-347)||(41690202-41690404)
chr7 (185-347)||(16197268-16197429)
chr7 (205-345)||(10534485-10534625)
chr7 (184-353)||(4567794-4567962)
chr7 (185-342)||(39618114-39618269)
chr7 (186-340)||(8614563-8614717)
chr7 (21-94)||(41690415-41690488)
chr7 (217-332)||(3835325-3835440)
chr7 (209-344)||(28226735-28226870)
chr7 (223-345)||(35792586-35792708)
chr7 (185-345)||(2271381-2271539)
chr7 (183-347)||(2798784-2798948)
chr7 (222-344)||(12394644-12394767)
chr7 (185-319)||(37124624-37124757)
chr7 (183-320)||(10025848-10025985)
chr7 (188-347)||(27723707-27723854)
chr7 (210-285)||(15643633-15643708)
chr7 (223-347)||(43368966-43369088)
chr7 (188-343)||(2273282-2273434)
chr7 (183-287)||(14771071-14771174)
chr7 (183-287)||(15221523-15221626)
chr7 (209-287)||(4962617-4962694)
chr7 (217-306)||(47541912-47542004)
chr7 (240-353)||(7808792-7808905)
chr7 (183-287)||(39434426-39434530)
chr7 (178-320)||(33258861-33259004)
chr7 (209-283)||(46671701-46671775)
chr7 (271-342)||(41747036-41747107)
chr7 (217-287)||(25290949-25291018)
chr7 (183-287)||(4678857-4678963)
[»] chr8 (22 HSPs)
chr8 (188-344)||(5871260-5871416)
chr8 (182-342)||(34146692-34146852)
chr8 (210-343)||(27232096-27232229)
chr8 (183-345)||(34039298-34039460)
chr8 (185-347)||(32234107-32234267)
chr8 (190-332)||(7694941-7695083)
chr8 (183-345)||(14896992-14897154)
chr8 (185-342)||(38401960-38402114)
chr8 (185-316)||(1530245-1530376)
chr8 (178-309)||(3742189-3742320)
chr8 (217-343)||(11087585-11087710)
chr8 (222-285)||(1256315-1256378)
chr8 (183-306)||(29315276-29315399)
chr8 (183-290)||(35970117-35970223)
chr8 (183-287)||(9455560-9455663)
chr8 (186-246)||(38459081-38459141)
chr8 (209-287)||(3443386-3443464)
chr8 (223-283)||(39140050-39140111)
chr8 (279-343)||(38457743-38457807)
chr8 (209-296)||(25307518-25307604)
chr8 (272-343)||(30887529-30887600)
chr8 (246-287)||(2742643-2742684)
[»] chr5 (24 HSPs)
chr5 (185-344)||(8544171-8544330)
chr5 (185-339)||(17201920-17202074)
chr5 (185-350)||(6428502-6428663)
chr5 (186-347)||(32474589-32474749)
chr5 (185-347)||(19804176-19804338)
chr5 (185-344)||(11991722-11991881)
chr5 (185-347)||(12436178-12436339)
chr5 (224-347)||(1583927-1584049)
chr5 (215-342)||(42673543-42673669)
chr5 (209-340)||(39940187-39940317)
chr5 (185-319)||(28620492-28620625)
chr5 (185-284)||(1584179-1584278)
chr5 (183-287)||(36059592-36059695)
chr5 (223-343)||(13219885-13220007)
chr5 (183-306)||(248936-249057)
chr5 (222-332)||(18412847-18412957)
chr5 (181-287)||(20202161-20202267)
chr5 (225-317)||(11825263-11825355)
chr5 (222-314)||(14967822-14967914)
chr5 (272-347)||(25612841-25612916)
chr5 (183-277)||(17558305-17558398)
chr5 (302-343)||(32474523-32474564)
chr5 (188-251)||(36244539-36244602)
chr5 (183-309)||(37270031-37270156)
[»] chr3 (30 HSPs)
chr3 (185-347)||(45647010-45647171)
chr3 (185-343)||(2599478-2599636)
chr3 (186-347)||(6749358-6749518)
chr3 (185-335)||(2094196-2094346)
chr3 (185-343)||(16237033-16237191)
chr3 (209-347)||(45667851-45667989)
chr3 (209-347)||(27817850-27817993)
chr3 (185-349)||(34669092-34669257)
chr3 (186-347)||(6472283-6472441)
chr3 (185-347)||(5494037-5494198)
chr3 (213-319)||(19578487-19578590)
chr3 (267-345)||(1405299-1405376)
chr3 (223-309)||(21916015-21916101)
chr3 (209-330)||(45759127-45759248)
chr3 (178-284)||(25841500-25841603)
chr3 (183-309)||(9589211-9589340)
chr3 (183-305)||(21933945-21934065)
chr3 (209-287)||(21959389-21959467)
chr3 (190-294)||(37030417-37030521)
chr3 (222-310)||(42735097-42735185)
chr3 (208-315)||(19229324-19229430)
chr3 (183-306)||(38750496-38750618)
chr3 (209-287)||(13779145-13779223)
chr3 (217-314)||(376162-376259)
chr3 (183-312)||(633074-633202)
chr3 (222-283)||(27264278-27264339)
chr3 (183-314)||(12568829-12568959)
chr3 (183-314)||(13545293-13545423)
chr3 (183-345)||(296868-297030)
chr3 (209-287)||(7259367-7259445)
[»] scaffold1986 (1 HSPs)
scaffold1986 (185-350)||(557-722)
[»] chr6 (14 HSPs)
chr6 (191-342)||(2437273-2437424)
chr6 (185-343)||(8049778-8049938)
chr6 (185-342)||(14093252-14093409)
chr6 (209-345)||(23410950-23411086)
chr6 (178-287)||(7972293-7972402)
chr6 (261-343)||(8049675-8049757)
chr6 (183-287)||(21526960-21527064)
chr6 (183-309)||(26252049-26252174)
chr6 (187-344)||(25056985-25057140)
chr6 (183-314)||(6110663-6110794)
chr6 (183-309)||(31656042-31656168)
chr6 (183-281)||(6026522-6026619)
chr6 (209-290)||(21013164-21013243)
chr6 (186-343)||(31660870-31661027)
[»] chr4 (30 HSPs)
chr4 (185-343)||(9808039-9808195)
chr4 (183-320)||(24073374-24073511)
chr4 (188-347)||(38839943-38840100)
chr4 (185-347)||(45666724-45666884)
chr4 (210-345)||(49299389-49299524)
chr4 (185-347)||(54982199-54982361)
chr4 (185-339)||(17330842-17330995)
chr4 (185-343)||(53393792-53393949)
chr4 (188-343)||(19443092-19443235)
chr4 (185-298)||(47944003-47944111)
chr4 (261-347)||(25494215-25494299)
chr4 (183-294)||(41503030-41503141)
chr4 (209-283)||(46430468-46430542)
chr4 (273-346)||(9089141-9089214)
chr4 (183-340)||(49263490-49263649)
chr4 (185-347)||(34031511-34031675)
chr4 (261-343)||(6949450-6949532)
chr4 (209-287)||(38433908-38433985)
chr4 (222-321)||(37209624-37209721)
chr4 (188-314)||(50721384-50721509)
chr4 (185-347)||(1821114-1821267)
chr4 (215-292)||(20782914-20782991)
chr4 (185-281)||(9088788-9088884)
chr4 (278-340)||(33809356-33809418)
chr4 (209-287)||(55344059-55344137)
chr4 (253-314)||(53370161-53370222)
chr4 (223-287)||(24537984-24538047)
chr4 (178-309)||(33890060-33890189)
chr4 (222-341)||(46250277-46250394)
chr4 (183-251)||(2685132-2685200)
[»] chr1 (23 HSPs)
chr1 (209-347)||(41117404-41117542)
chr1 (185-342)||(6295234-6295391)
chr1 (185-345)||(13254189-13254349)
chr1 (185-319)||(36319483-36319616)
chr1 (183-309)||(52415605-52415732)
chr1 (223-342)||(45925834-45925953)
chr1 (183-343)||(10430125-10430284)
chr1 (183-307)||(23698884-23699008)
chr1 (187-309)||(11795508-11795629)
chr1 (178-306)||(40518621-40518747)
chr1 (183-289)||(1394831-1394936)
chr1 (183-336)||(19270107-19270257)
chr1 (222-311)||(39386986-39387075)
chr1 (183-343)||(2752078-2752237)
chr1 (188-294)||(32769462-32769569)
chr1 (209-287)||(11237660-11237738)
chr1 (209-350)||(21965692-21965833)
chr1 (178-287)||(31622813-31622922)
chr1 (189-285)||(43021437-43021531)
chr1 (183-283)||(4395569-4395669)
chr1 (261-309)||(4671872-4671920)
chr1 (283-347)||(43021314-43021378)
chr1 (279-347)||(52957634-52957702)
[»] scaffold0005 (2 HSPs)
scaffold0005 (185-345)||(257205-257364)
scaffold0005 (200-287)||(271918-272006)
[»] chr2 (28 HSPs)
chr2 (183-345)||(11084315-11084477)
chr2 (185-319)||(3309450-3309583)
chr2 (185-319)||(29408372-29408504)
chr2 (261-343)||(16806142-16806224)
chr2 (261-343)||(16845423-16845505)
chr2 (205-319)||(21253025-21253140)
chr2 (209-345)||(25713876-25714013)
chr2 (275-347)||(45272930-45273002)
chr2 (183-345)||(44898600-44898762)
chr2 (209-285)||(27746964-27747040)
chr2 (183-287)||(34424417-34424521)
chr2 (185-312)||(1397936-1398058)
chr2 (222-343)||(4700744-4700864)
chr2 (183-251)||(20170953-20171021)
chr2 (178-314)||(41541621-41541757)
chr2 (209-287)||(4959044-4959122)
chr2 (209-314)||(13588490-13588594)
chr2 (183-347)||(42871943-42872103)
chr2 (276-350)||(149973-150047)
chr2 (209-290)||(36243579-36243659)
chr2 (209-285)||(45271904-45271979)
chr2 (183-309)||(157647-157772)
chr2 (209-251)||(4135806-4135848)
chr2 (183-347)||(4317030-4317198)
chr2 (186-287)||(7485738-7485839)
chr2 (190-251)||(37360798-37360859)
chr2 (199-251)||(29881782-29881834)
chr2 (183-294)||(33660597-33660706)
[»] scaffold1327 (1 HSPs)
scaffold1327 (185-343)||(1195-1352)
[»] scaffold0188 (1 HSPs)
scaffold0188 (183-343)||(5637-5798)
[»] scaffold0841 (2 HSPs)
scaffold0841 (209-345)||(4214-4350)
scaffold0841 (178-338)||(3865-4026)
[»] scaffold0097 (1 HSPs)
scaffold0097 (186-287)||(48529-48629)
[»] scaffold0018 (1 HSPs)
scaffold0018 (186-257)||(184568-184639)
[»] scaffold0785 (1 HSPs)
scaffold0785 (209-296)||(5429-5515)
[»] scaffold1130 (1 HSPs)
scaffold1130 (209-287)||(707-784)
[»] scaffold0637 (1 HSPs)
scaffold0637 (222-343)||(3773-3892)
[»] scaffold0006 (1 HSPs)
scaffold0006 (246-287)||(46019-46060)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 145 - 347
Target Start/End: Complemental strand, 41690404 - 41690202
Alignment:
Q  145 gaatgaggttaatttagtccctccgtttctttttaactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcct 244  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||| |||||||||||    
T  41690404 gaatgagtttactttagtccctccgtttctttttaactaagtgtatttttacacattttctttttattataccctcattttaattcacgaataaattcct 41690305  T
Q  245 attttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcc 344  Q
    | ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  41690304 actttttagcacaaactttatatttccaataaatttaatatgttatatttatctcgtaacaaacaattgtcaattattatctttttctccaacaaattcc 41690205  T
Q  345 tat 347  Q
    |||    
T  41690204 tat 41690202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 16197429 - 16197268
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||| ||||| |||||| |||||||||| ||||||||||||||||||| ||| ||| ||||| ||||||||||||||||||    
T  16197429 gtgtatttttgcacattttctttctattataccctcattttaatccatcaataaattcctatttttt-gcataaactttatctttccaataaatttaata 16197331  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||| ||| ||| ||||||||||||||||| |||| |||||||| ||||||||||||||||    
T  16197330 tgttatctttctcttgtaacaaacaattgtcagttattatctttttttccaacaaattcctat 16197268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 205 - 345
Target Start/End: Original strand, 10534485 - 10534625
Alignment:
Q  205 tttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaac 304  Q
    ||||||||| ||| || |||||||||||||||||||||||||||||| ||||| ||||||| |||  ||||||||||||||||||| ||||| | |||||    
T  10534485 tttttattataccttcattttaatccaccaataaattcctatttttttgcacacattttatttttttaataaatttaatatgttatctttatgtcgtaac 10534584  T
Q  305 aaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    |||||||||||  |||| |||||||||||||||||||||||    
T  10534585 aaacaattgtctgttattatctttttctccaacaaattcct 10534625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 184 - 353
Target Start/End: Complemental strand, 4567962 - 4567794
Alignment:
Q  184 agtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaat 283  Q
    ||||||||||||||| ||  |||| ||||| |||||| ||||||||||||| ||||||| |||||||| ||||| | ||||| |||||||||||||||||    
T  4567962 agtgtatttttacacgttatctttctattataccctcattttaatccaccactaaattcttatttttt-gcacacactttatctttccaataaatttaat 4567864  T
Q  284 atgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctatattctt 353  Q
    ||||||||||| |||  ||||||||||||||||||||| |||||||||| |  |||||| |||| |||||    
T  4567863 atgttatatttctctcataacaaacaattgtcaattattatctttttcttcggcaaatttctattttctt 4567794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 342
Target Start/End: Complemental strand, 39618269 - 39618114
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| |||||| ||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||  |    
T  39618269 gtgtatttttgcacattttcttcctattataccctcattttaatccaccaataaattcttatttttttgcacatattttatctttccaataaattta--a 39618172  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaatt 342  Q
    |||||| ||| |||  ||||||||||||| || |||| || ||||||| |||||||||    
T  39618171 tgttatttttctctcataacaaacaattgccagttattatatttttcttcaacaaatt 39618114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 186 - 340
Target Start/End: Original strand, 8614563 - 8614717
Alignment:
Q  186 tgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcct-attttttagcacaaattttatatttccaataaatttaata 284  Q
    ||||||||  ||||||| |||||||||| ||| || |||||||||||||||||||||||  |||||| ||||| | ||||| |||| |||||| ||||||    
T  8614563 tgtattttagcacatttgctttttattataccttcattttaatccaccaataaattcctcttttttttgcacacactttatctttctaataaa-ttaata 8614661  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaa 340  Q
    | |||| ||| ||| ||||||||||||||||| |||| ||||||||||||||||||    
T  8614662 tattatctttctctcgtaacaaacaattgtcagttattatctttttctccaacaaa 8614717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 41690488 - 41690415
Alignment:
Q  21 actacaatttgattgatttgatagtcaaatttgtatgatcaatgacttggttgttatgctaataatattaagga 94  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  41690488 actacaatttgattgatttgatagtcaaatttgtatggtcaataacttggttgttatgctaataatattaagga 41690415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 217 - 332
Target Start/End: Original strand, 3835325 - 3835440
Alignment:
Q  217 cctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtca 316  Q
    |||| ||||||||||| |||||||||||||||||| ||||| | ||||| |||||||||||||||||||||||| ||| ||| ||||||||||| | |||    
T  3835325 cctcattttaatccacgaataaattcctatttttttgcacacactttatctttccaataaatttaatatgttatctttctcttgtaacaaacaaatttca 3835424  T
Q  317 attatcatctttttct 332  Q
     |||| || |||||||    
T  3835425 gttattatttttttct 3835440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 344
Target Start/End: Complemental strand, 28226870 - 28226735
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaac 308  Q
    ||||| |||||  ||||||||||  |||| ||||||||| ||| ||||| ||| ||| |||||||||||||||||||||||| ||| | | |||||||||    
T  28226870 tattatacccttattttaatccaataatatattcctattgttttgcacacattatatctttccaataaatttaatatgttatctttctatcgtaacaaac 28226771  T
Q  309 aattgtcaattatcatctttttctccaacaaattcc 344  Q
    |||||| | |||  ||||||||||||||||||||||    
T  28226770 aattgttagttaatatctttttctccaacaaattcc 28226735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 345
Target Start/End: Original strand, 35792586 - 35792708
Alignment:
Q  223 tttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatc 322  Q
    |||| |||||||||||||||||||||||||   || | ||||| |||| ||||||||||||||||||| ||| ||| ||||||||||||||| | ||||     
T  35792586 tttactccaccaataaattcctattttttatttcacactttatctttctaataaatttaatatgttatctttctctcgtaacaaacaattgtaacttatt 35792685  T
Q  323 atctttttctccaacaaattcct 345  Q
    |||||||||||||| ||| ||||    
T  35792686 atctttttctccaaaaaaatcct 35792708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 345
Target Start/End: Original strand, 2271381 - 2271539
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| | |||| |||||||| |||| ||||||| |||| |||  ||||   ||||| |||||||||| |||||||    
T  2271381 gtgtatttttgcacattttcttcctattatatcctcattttaatctaccactaaattcttattgttttccacaccctttatctttccaataa-tttaata 2271479  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    |||||| ||| ||| ||||||||||||||||| |||| |||| ||||||||||||||||||    
T  2271480 tgttat-tttctctcgtaacaaacaattgtcagttattatctctttctccaacaaattcct 2271539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 347
Target Start/End: Complemental strand, 2798948 - 2798784
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||  ||| |||  ||||| |||||  || ||||||||||||| ||| ||||||||| ||||| | ||| | |||| |||||||||||    
T  2798948 aagtgtatttttgcatctttacttcctattatacccttattctaatccaccaatatatttctatttttttgcacacactttctctttctaataaatttaa 2798849  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||||| |||  || ||||||||||||| | |||||  || ||||||||||||||||||||||    
T  2798848 tatgttatctttcgctcgtaacaaacaatttttaattactatatttttctccaacaaattcctat 2798784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 344
Target Start/End: Complemental strand, 12394767 - 12394644
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattat 321  Q
    |||||||||||||||||  || |||| ||| ||||| ||||||  |||||||||||||||| ||||||| ||| |||  |||||||||||||||| ||||    
T  12394767 ttttaatccaccaataacatcttattgttttgcacacattttagctttccaataaatttaacatgttatctttctctcttaacaaacaattgtcagttat 12394668  T
Q  322 catc-tttttctccaacaaattcc 344  Q
     ||| ||||||||||| |||||||    
T  12394667 tatcttttttctccaataaattcc 12394644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 37124757 - 37124624
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||| ||||| ||||||| |||  ||||| |||||  |||||||| || ||||||||| | |||||| ||||| | ||||| ||||||||||||||||||    
T  37124757 gtgtgtttttgcacattttcttcctattataccctgattttaatcaacaaataaattcatttttttt-gcacacactttatctttccaataaatttaata 37124659  T
Q  285 tgttatatttatctagtaacaaacaattgtcaatt 319  Q
    |||||| ||| |||  |||||||||||||||||||    
T  37124658 tgttatctttctctcataacaaacaattgtcaatt 37124624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 10025848 - 10025985
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||| ||||||| ||||||| ||| || ||| |||||  |||||||||| ||||| |||| | |||||||||||| | ||| | ||| ||||||||||||    
T  10025848 aagtttatttttgcacatttacttcttgttatacccttattttaatccatcaatacattcatgttttttagcacacaatttctcttttcaataaatttaa 10025947  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaatta 320  Q
    |||||||| ||| | | ||||||||||||||| |||||    
T  10025948 tatgttatctttcttttgtaacaaacaattgttaatta 10025985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 347
Target Start/End: Complemental strand, 27723854 - 27723707
Alignment:
Q  188 tatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    |||||||| | |||| |||  ||||| |||||| |||||||||||||||||||| ||||||     |||| | ||||| |||||||||||||||||||||    
T  27723854 tatttttaaatattttcttcctattataccctcattttaatccaccaataaatttctattt-----cacacactttatctttccaataaatttaatatgt 27723760  T
Q  288 tatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||| ||| ||  |||||||||       ||||||  ||||||||||||||||||||||||    
T  27723759 tatttttctcctgtaacaaac-------aattattgtctttttctccaacaaattcctat 27723707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 15643708 - 15643633
Alignment:
Q  210 attacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    |||| |||||| ||||||||||| ||||| || ||||||||| ||||| ||||||| |||||||||||||||||||    
T  15643708 attataccctcattttaatccactaataattttctatttttttgcacacattttatctttccaataaatttaatat 15643633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 43369088 - 43368966
Alignment:
Q  223 tttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatc 322  Q
    |||||||||| |||| ||| ||||||||| ||||| | | | | ||  |||||||||||||||||||| ||| ||| ||||||| ||||||| | ||||     
T  43369088 tttaatccacaaatatatttctatttttttgcacacactctctttt--caataaatttaatatgttatttttctctcgtaacaagcaattgttagttatt 43368991  T
Q  323 atctttttctccaacaaattcctat 347  Q
    || ||||||||||||||||| ||||    
T  43368990 atttttttctccaacaaatttctat 43368966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 343
Target Start/End: Original strand, 2273282 - 2273434
Alignment:
Q  188 tatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||||| ||| ||| |||  ||||| |||||  |||||||  ||||||| |||||||||||||  |||| | ||| | ||| |||||||||||||  ||    
T  2273282 tatttttgcacctttacttcctattatacccttattttaatgtaccaatatattcctattttttt-cacacactttctcttttcaataaatttaat--gt 2273378  T
Q  288 tatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    ||| ||| ||| ||||||||||||||| | |||| |||||||||| ||||||||||    
T  2273379 tatctttctctcgtaacaaacaattgttagttattatctttttcttcaacaaattc 2273434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 14771071 - 14771174
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    ||||||||||||||||| ||  | | ||||| |||||| ||||||||||| ||||| |||||||||||| ||||| | ||||| ||| ||||||||| ||    
T  14771071 aagtgtatttttacacactttttctctattataccctcattttaatccactaataatttcctatttttt-gcacacactttatcttttcaataaattaaa 14771169  T
Q  283 tatgt 287  Q
    |||||    
T  14771170 tatgt 14771174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 15221523 - 15221626
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    ||||||||||||||||| ||  | | ||||| |||||| ||||||||||| ||||| |||||||||||| ||||| | ||||| ||| ||||||||| ||    
T  15221523 aagtgtatttttacacactttttctctattataccctcattttaatccactaataatttcctatttttt-gcacacactttatcttttcaataaattaaa 15221621  T
Q  283 tatgt 287  Q
    |||||    
T  15221622 tatgt 15221626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 4962617 - 4962694
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| |||||| |||||||| || ||||| |||||||||||| ||||| | ||||| |||||||||||||||||||||    
T  4962617 tattataccctcattttaatcaactaataatttcctatttttt-gcacacactttatctttccaataaatttaatatgt 4962694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 306
Target Start/End: Complemental strand, 47542004 - 47541912
Alignment:
Q  217 cctcgttttaatccaccaataaattcctat---tttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaa 306  Q
    |||| |||||||||||||||||||| || |   ||||| || || | ||||| |||||||||||||||||||||||||||| ||| |||||||    
T  47542004 cctcattttaatccaccaataaatttctctgttttttttgcgcacactttatctttccaataaatttaatatgttatatttctctcgtaacaa 47541912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 7808792 - 7808905
Alignment:
Q  240 ttcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaa 339  Q
    |||||| ||||| ||||||| ||| | ||| |||||||||||||||||||||||| |||  |||||||||| ||| | |||    || ||||||||||||    
T  7808792 ttcctaattttttgcacaaaatttctcttttcaataaatttaatatgttatatttctctcataacaaacaaatgttagttactccctctttctccaacaa 7808891  T
Q  340 attcctatattctt 353  Q
    |||  |||||||||    
T  7808892 atttttatattctt 7808905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 39434530 - 39434426
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| |||| ||  ||  ||||| |||||  |||||||| || ||||| |||||||||||  ||||| | ||||| ||||||||||||||||    
T  39434530 aagtgtatttttgcacacttttttcctattatacccttattttaatcgactaataatttcctatttttgtgcacacactttatctttccaataaatttaa 39434431  T
Q  283 tatgt 287  Q
    |||||    
T  39434430 tatgt 39434426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 320
Target Start/End: Complemental strand, 33259004 - 33258861
Alignment:
Q  178 taactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctatt----ttttagcacaaattttatatttccaa 273  Q
    |||| ||||||||||||  | |||| |||  ||||| |||||| |||||||||||||||| |||||||||    |||| ||| | |||||   ||| |||    
T  33259004 taacgaagtgtatttttgtagattttcttcctattataccctcattttaatccaccaatatattcctatttttttttttgcatacatttt---ttttcaa 33258908  T
Q  274 taaatttaatatgttatatttatctagtaacaaacaattgtcaatta 320  Q
    ||||||||||||| ||| ||| ||| |||||||||| |||| |||||    
T  33258907 taaatttaatatggtatctttctcttgtaacaaacatttgttaatta 33258861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 46671701 - 46671775
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaat 283  Q
    ||||| |||||| |||||| |||| ||||| || ||||||||| ||||| | ||||| |||||||||||||||||    
T  46671701 tattataccctcattttaagccactaataattttctatttttttgcacacactttatttttccaataaatttaat 46671775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 41747036 - 41747107
Alignment:
Q  271 caataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaatt 342  Q
    ||||||||||||||| |||| ||| ||| ||||||||||||||| | |||  || |||||||| ||||||||    
T  41747036 caataaatttaatattttatctttctctcgtaacaaacaattgttagttactatatttttctctaacaaatt 41747107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 25291018 - 25290949
Alignment:
Q  217 cctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    |||| |||||||||||  |||| ||||||||||||  |||| |||||||  ||||||||||||||||||||    
T  25291018 cctcattttaatccactgataatttcctattttttt-cacacattttatgattccaataaatttaatatgt 25290949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 4678963 - 4678857
Alignment:
Q  183 aagtgtatttttacacatttccttt---ttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatt 279  Q
    |||||||||||||||| |||  |||   |||||| | |||| ||||||||||| || || ||| |||||||| | ||| | ||||| |||||||||||||    
T  4678963 aagtgtatttttacactttttttttctcttattatatcctcattttaatccactaacaatttcatatttttt-gtacacactttatctttccaataaatt 4678865  T
Q  280 taatatgt 287  Q
    ||||||||    
T  4678864 taatatgt 4678857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 188 - 344
Target Start/End: Complemental strand, 5871416 - 5871260
Alignment:
Q  188 tatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||||||||||||| |||  ||||| ||| || |||||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||||||||||||    
T  5871416 tatttttacacattttcttcctattataccttcattttaatccaccaataaattcctattttttcgcacacattttatttttccaatgaatttaatatgt 5871317  T
Q  288 tatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcc 344  Q
    ||| ||| ||| |||||||||||||||||||||| || |||||||||||||||||||    
T  5871316 tatttttctcttgtaacaaacaattgtcaattattatttttttctccaacaaattcc 5871260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 182 - 342
Target Start/End: Complemental strand, 34146852 - 34146692
Alignment:
Q  182 taagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaattta 281  Q
    ||||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||    
T  34146852 taagtgtatttttacacattttctttctattataccctcattttaatccaccaataaattcttatttttttgcacacattttatctttccaataaattta 34146753  T
Q  282 atatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaatt 342  Q
    ||||||||| ||| | | | ||||||||||||||  |||| ||||||||||||||||||||    
T  34146752 atatgttatctttctttcgcaacaaacaattgtctgttattatctttttctccaacaaatt 34146692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 210 - 343
Target Start/End: Complemental strand, 27232229 - 27232096
Alignment:
Q  210 attacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaaca 309  Q
    |||| |||||| |||||||| ||||||||||| ||| ||||| ||||| ||||||| |||| ||||||||||||||||||| ||| ||| ||||||||||    
T  27232229 attataccctcattttaatcaaccaataaattactagttttttgcacacattttatctttcaaataaatttaatatgttatctttctctcgtaacaaaca 27232130  T
Q  310 attgtcaattatcatctttttctccaacaaattc 343  Q
    ||||||| |||| |||||||||||||||||||||    
T  27232129 attgtcagttattatctttttctccaacaaattc 27232096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 34039460 - 34039298
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||||||||||| |||| ||||  | ||||||||||||||||||||| ||||||||||| | ||||| ||||| | |||||||||| |||||    
T  34039460 aagtgtatttttacacattttctttctattttatcctcgttttaatccaccaatatattcctattttcttgcacacattttctctttccaataagtttaa 34039361  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    ||| |||| ||| |||  ||||||| | |||| | |||  || ||||||||||||||||||||    
T  34039360 tatattatctttctctcataacaaatatttgttagttactatatttttctccaacaaattcct 34039298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 32234267 - 32234107
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    ||||||||||  |||||| |||  ||||| |||||| ||| |||||||||||||||||||||||||| |||||   ||||| |||  |||||||||||||    
T  32234267 gtgtatttttgtacattttcttcctattataccctcatttcaatccaccaataaattcctatttttttgcacac--tttatttttttaataaatttaata 32234170  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||| ||| ||| ||||||||||||||| | || | ||||||||||| |||||||| ||||    
T  32234169 tgttatttttctctcgtaacaaacaattgttagtttttatctttttctctaacaaatttctat 32234107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 190 - 332
Target Start/End: Original strand, 7694941 - 7695083
Alignment:
Q  190 tttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgtta 289  Q
    ||||| ||||||| |||  ||||| | |||| |||||||| || |||||||||||||||||| ||||| | ||||| ||| |||||||||||||||||||    
T  7694941 tttttgcacattttcttcctattatatcctcattttaatctacaaataaattcctatttttttgcacacactttatcttttcaataaatttaatatgtta 7695040  T
Q  290 tatttatctagtaacaaacaattgtcaattatcatctttttct 332  Q
    | ||| ||| ||||||||||||||||| |||| | ||||||||    
T  7695041 tctttctcttgtaacaaacaattgtcagttattacctttttct 7695083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 14897154 - 14896992
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| |||| |||||  ||||| |||||||||||||||| |||| |||||| | |||||   ||| | ||| ||||||||||||    
T  14897154 aagtgtatttttgcacattttctttctattatgccctcattttaatccaccaatatattcttattttcttgcacacgctttctcttttcaataaatttaa 14897055  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    |||||||||||| ||| |||||||||| |||| | ||   |||||||||||||| ||||||||    
T  14897054 tatgttatatttctctcgtaacaaacatttgttagttcctatctttttctccaaaaaattcct 14896992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 342
Target Start/End: Complemental strand, 38402114 - 38401960
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| |||||||| ||| ||||| |||||| |||||||||||| |||||||| || ||||| ||||| | ||||| ||||||||||| ||||||    
T  38402114 gtgtatttttgcacatttc-tttctattataccctcattttaatccaccgataaattcttaattttt-gcacacactttatctttccaataaacttaata 38402017  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaatt 342  Q
    ||||||  || |||  |||||||||||||||  |||| ||||||||||||||||||||    
T  38402016 tgttatcattctctcataacaaacaattgtc-gttattatctttttctccaacaaatt 38401960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 316
Target Start/End: Original strand, 1530245 - 1530376
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| || |||| ||| |||||| ||| || |||||||| || ||||| ||||||||||||  |||| ||||||| ||| ||||||||||||||    
T  1530245 gtgtatttttgcaaattttcttcttattataccttcattttaatctacaaataacttcctatttttttccacacattttatcttttcaataaatttaata 1530344  T
Q  285 tgttatatttatctagtaacaaacaattgtca 316  Q
    |||||| ||| | | |||||||||||||||||    
T  1530345 tgttatctttctttcgtaacaaacaattgtca 1530376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 3742320 - 3742189
Alignment:
Q  178 taactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaa 277  Q
    |||| |||||||||||| ||||||| |||||||||| ||||||  ||||||||||||||| ||  ||| |||||  | || | ||||| |||||||||||    
T  3742320 taacaaagtgtatttttgcacattttctttttattataccctcaatttaatccaccaatatatctctactttttgacgcacactttatctttccaataaa 3742221  T
Q  278 tttaatatgttatatttatctagtaacaaaca 309  Q
    ||||||||||||||||| |||  |||||||||    
T  3742220 tttaatatgttatatttttctcataacaaaca 3742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 343
Target Start/End: Complemental strand, 11087710 - 11087585
Alignment:
Q  217 cctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtca 316  Q
    |||| ||||||||||||||||||||| ||||||||  || | ||||||| |||  ||||||||||| ||||||| ||| |||  ||||||||||||||||    
T  11087710 cctcattttaatccaccaataaattcttattttttt-catacattttatctttttaataaatttaacatgttatctttctcttataacaaacaattgtca 11087612  T
Q  317 attatcatctttttctccaacaaattc 343  Q
     |||  |||||||||||||||||||||    
T  11087611 gttactatctttttctccaacaaattc 11087585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 1256315 - 1256378
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    ||||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||||||||    
T  1256315 ttttaatccaccaataaattcttattttttagcacacactttatctttccaataaatttaatat 1256378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 29315276 - 29315399
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||| ||| ||||||| |||  ||||| ||||||  ||||||||||||||| ||   |||||||| ||||| | ||||| ||| ||||||||||||    
T  29315276 aagtgtatatttgcacattttcttcctattataccctcaatttaatccaccaatatatatttattttttggcacatactttatcttttcaataaatttaa 29315375  T
Q  283 tatgttatatttatctagtaacaa 306  Q
    |||||||||||| ||| |||||||    
T  29315376 tatgttatatttttctcgtaacaa 29315399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 290
Target Start/End: Original strand, 35970117 - 35970223
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| |||  ||| | ||||||||||||||||||||||| |||||||||||||  ||||   ||| | ||||||||||||||||    
T  35970117 aagtgtatttttgcacattttcttcctatcataccctcgttttaatccaccaatatattcctattttttt-cacacgctttctttttccaataaatttaa 35970215  T
Q  283 tatgttat 290  Q
    ||||||||    
T  35970216 tatgttat 35970223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 9455663 - 9455560
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| |||| ||  ||| ||||| |||||| ||||||| ||| ||||| ||| || ||||| ||||| ||||||| ||||||||||||||||    
T  9455663 aagtgtatttttgcacacttt-tttctattataccctcattttaatacactaataatttcttacttttttgcacacattttatttttccaataaatttaa 9455565  T
Q  283 tatgt 287  Q
    |||||    
T  9455564 tatgt 9455560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 38459141 - 38459081
Alignment:
Q  186 tgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctat 246  Q
    |||||||||||||| || |||| ||||| |||||| |||||||||| ||||||||||||||    
T  38459141 tgtatttttacacaatttctttctattataccctcattttaatccaacaataaattcctat 38459081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 3443386 - 3443464
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| |||||| ||||||||||| ||||| |||||||| |||  |||| | ||||| | |||||||||||||||||||    
T  3443386 tattataccctcattttaatccactaataatttcctattctttttcacacactttatctatccaataaatttaatatgt 3443464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 39140050 - 39140111
Alignment:
Q  223 tttaatccaccaataaattccta-ttttttagcacaaattttatatttccaataaatttaat 283  Q
    ||||||||||||||||||||| | |||||| ||||||| ||||| ||| |||||||||||||    
T  39140050 tttaatccaccaataaattccaattttttttgcacaaaatttatcttttcaataaatttaat 39140111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 38457807 - 38457743
Alignment:
Q  279 ttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    |||||||||||| ||| ||| ||||||||||||||||  || | |||||| ||||||||||||||    
T  38457807 ttaatatgttatctttctcttgtaacaaacaattgtcggttgttatctttctctccaacaaattc 38457743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 25307518 - 25307604
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttat 296  Q
    ||||| ||||||||||||||||| ||||||| || |||||||| ||| |  |||| | ||| ||||||||| | ||||||||||||||    
T  25307518 tattataccctcgttttaatccatcaataaaatcatatttttt-gcagaggttttttcttttcaataaattaattatgttatatttat 25307604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 30887529 - 30887600
Alignment:
Q  272 aataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    |||||||||||||||| || ||| |||  ||||||||| |||| | |||  |||||||||||||||||||||    
T  30887529 aataaatttaatatgtaatttttctctcctaacaaacatttgttagttactatctttttctccaacaaattc 30887600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 2742643 - 2742684
Alignment:
Q  246 ttttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    |||||| ||||| ||||||| |||||||||||||||||||||    
T  2742643 tttttttgcacacattttatctttccaataaatttaatatgt 2742684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 185 - 344
Target Start/End: Original strand, 8544171 - 8544330
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| |||||| |||||||||||||||||||||||  ||||| ||||| |  |||||||||||||||||||||||    
T  8544171 gtgtatttttgcacattttcttcatattataccctcattttaatccaccaataaattcctgattttttgcacacaccttatatttccaataaatttaata 8544270  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcc 344  Q
    |||||| ||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||    
T  8544271 tgttatctttctctcgtaagaaacaattgtcaattattatctttttctccaacaaattcc 8544330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 185 - 339
Target Start/End: Original strand, 17201920 - 17202074
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| |||||| ||||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||||||||    
T  17201920 gtgtatttttgcacattttcttcctattataccctcattttaatccaccaataaattcctatttttttacacaaactttatctttccaataaatttaata 17202019  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaa 339  Q
    |||||| ||| ||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  17202020 tgttatttttctctcgtaacaaacgattgtcagttatgatcttattctccaacaa 17202074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 350
Target Start/End: Complemental strand, 6428663 - 6428502
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||| ||||| ||| || ||||||||||||||||| |||||||||||| ||||| | ||||| ||||||||||||||||||    
T  6428663 gtgtatttttgcacattttctttctattataccttcattttaatccaccaataagttcctatttttttgcacacactttatctttccaataaatttaata 6428564  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctatatt 350  Q
    |||||| ||| ||| ||||||||||||||| | |||| |||   |||| |||||||||||||||||    
T  6428563 tgttatctttctctcgtaacaaacaattgt-agttattatc---ttctgcaacaaattcctatatt 6428502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 186 - 347
Target Start/End: Complemental strand, 32474749 - 32474589
Alignment:
Q  186 tgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    ||||||||| ||||||| |||| ||||| |||||| |||||||||| |||||||||| |||||||| ||| | | ||||| |||||||||||||||||||    
T  32474749 tgtatttttgcacattttctttctattataccctcattttaatccaacaataaattcatattttttcgcaaacactttatctttccaataaatttaatat 32474650  T
Q  286 gttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||||| ||| | | |||| |||||||||||| |||| |||||||||| ||||||||| ||||    
T  32474649 gttatcttt-tatcgtaataaacaattgtcagttattatctttttcttcaacaaatttctat 32474589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 19804338 - 19804176
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    ||||||||||  |||||| |||  ||||  |||||| |||||||| || ||||||||| |||||||| | ||| | ||||| ||||||| ||||||||||    
T  19804338 gtgtatttttgtacattttcttcctattctaccctcattttaatcgacaaataaattcttatttttttgtacacactttatctttccaacaaatttaata 19804239  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||||||| ||| |||||||| ||||||||  ||| |||||||||||||||||||||||||    
T  19804238 tgttatatttctctggtaacaaataattgtcagctattatctttttctccaacaaattcctat 19804176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 344
Target Start/End: Original strand, 11991722 - 11991881
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  || || ||| || |||||||| ||||| |||||| | |||||| ||||||| |||||||||| |||||||||||||    
T  11991722 gtgtatttttgcacattttcttcctaatataccttcattttaatctaccaaaaaattcatgtttttttgcacaaactttatatttctaataaatttaata 11991821  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcc 344  Q
    |||||| ||| ||| |||||||||||||||||  ||| ||||||| || ||| |||||||    
T  11991822 tgttatctttctcttgtaacaaacaattgtcagatattatcttttacttcaaaaaattcc 11991881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 347
Target Start/End: Original strand, 12436178 - 12436339
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| || ||| ||||||||||||||||||||| ||||||||   ||| | ||||| ||| ||||| ||||||||    
T  12436178 gtgtatttttgcacattttcttcatattatacactcattttaatccaccaataaattcatattttttta-acacactttattttttcaatatatttaata 12436276  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||| ||| ||| ||||||||| ||||||  |||| |||||||||| ||||||||||||||    
T  12436277 tgttatctttctctggtaacaaactattgtcggttattatctttttcttcaacaaattcctat 12436339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 347
Target Start/End: Complemental strand, 1584049 - 1583927
Alignment:
Q  224 ttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatca 323  Q
    |||||||||||||||||||||||||||| ||||| | ||||| |||| ||||||||| ||| ||| ||||| |||  |||||||||||||||  |||| |    
T  1584049 ttaatccaccaataaattcctatttttttgcacacactttatctttctaataaatttcata-gttgtatttctctcataacaaacaattgtccgttatta 1583951  T
Q  324 tctttttctccaacaaattcctat 347  Q
    ||||||||||||| ||||||||||    
T  1583950 tctttttctccaataaattcctat 1583927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 342
Target Start/End: Original strand, 42673543 - 42673669
Alignment:
Q  215 accctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgt 314  Q
    ||||| |||||||||||||||||||||| |||||||| ||||| | |||||  ||| ||||||||||||||||||||||| |||  ||||||| ||||||    
T  42673543 acccttgttttaatccaccaataaattcttatttttt-gcacacactttatcattctaataaatttaatatgttatatttctctcataacaaataattgt 42673641  T
Q  315 caattatcatctttttctccaacaaatt 342  Q
    |  |||| ||||||||||| ||||||||    
T  42673642 cggttattatctttttctctaacaaatt 42673669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 39940187 - 39940317
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaac 308  Q
    ||||| |||||| ||||||||||||||||||||||||||||||  |||| | || || ||||||||||||||||||| |||| ||| |||  ||||||||    
T  39940187 tattataccctcattttaatccaccaataaattcctatttttt-tcacacacttgatctttccaataaatttaatattttatttttctctcataacaaac 39940285  T
Q  309 aattgtcaattatcatctttttctccaacaaa 340  Q
     ||||||  |||| | ||||||||||||||||    
T  39940286 tattgtccgttattaactttttctccaacaaa 39940317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 28620625 - 28620492
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||| ||| |||  ||||| |||||| ||||||||| ||| ||| |||||||||||| ||||| |  |||| ||| ||||||||||||||    
T  28620625 gtgtatttttgcaccttttcttcctattataccctcattttaatccgcca-taagttcctatttttttgcacacaccttatcttttcaataaatttaata 28620527  T
Q  285 tgttatatttatctagtaacaaacaattgtcaatt 319  Q
     ||||||||| ||| ||||||||||||||||||||    
T  28620526 agttatatttctctcgtaacaaacaattgtcaatt 28620492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 185 - 284
Target Start/End: Complemental strand, 1584278 - 1584179
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||| ||||| |||||| |||||||||||| ||||||| ||||||||  ||||| | ||||| ||||||||||||||||||    
T  1584278 gtgtatttttgcacattttctttctattataccctcattttaatccaccgataaatttctatttttctgcacacactttatctttccaataaatttaata 1584179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 36059592 - 36059695
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| |||||||  ||  ||||| |||||| ||||||||||| ||||| |||||||||||| ||||| | ||||| ||||||||||||||||    
T  36059592 aagtgtattttttcacatttttttcctattataccctcattttaatccactaataatttcctatttttt-gcacacactttatctttccaataaatttaa 36059690  T
Q  283 tatgt 287  Q
    |||||    
T  36059691 tatgt 36059695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 343
Target Start/End: Original strand, 13219885 - 13220007
Alignment:
Q  223 tttaatccaccaataaattcctattttttagcacaaattttatattt--ccaataaatttaatatgttatatttatctagtaacaaacaattgtcaatta 320  Q
    ||||||||||||||| ||| ||||||||| ||||| | ||||| |||  ||||||||||||||||||||| ||| | |  |||||||||||||| |||||    
T  13219885 tttaatccaccaatatatttctatttttttgcacacactttatttttttccaataaatttaatatgttatctttttatcataacaaacaattgtgaatta 13219984  T
Q  321 tcatctttttctccaacaaattc 343  Q
    | ||| |||||| | ||||||||    
T  13219985 ttatccttttcttcgacaaattc 13220007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 248936 - 249057
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||||||||||| |||  ||||| ||||||  |||||||||| || | ||  ||||||||| |||||   ||||| ||||||| ||||||||    
T  248936 aagtgtatttttacacattttcttcctattataccctcaatttaatccactaacatatctctattttttggcacac--tttatctttccaaaaaatttaa 249033  T
Q  283 tatgttatatttatctagtaacaa 306  Q
    |||||||||||| ||| |||||||    
T  249034 tatgttatatttttctcgtaacaa 249057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 332
Target Start/End: Original strand, 18412847 - 18412957
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttcc-aataaatttaatatgttatatttatctagtaacaaacaattgtcaatta 320  Q
    ||||||||||||||||||||  |||||||| ||||| | ||||| |||   |||||||||||||| |||| ||| ||| ||||||||||||||||| |||    
T  18412847 ttttaatccaccaataaatttttatttttt-gcacatactttattttttttaataaatttaatatattatctttctctcgtaacaaacaattgtcagtta 18412945  T
Q  321 tcatctttttct 332  Q
    | ||||||||||    
T  18412946 ttatctttttct 18412957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 20202267 - 20202161
Alignment:
Q  181 ctaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaattt 280  Q
    |||||||||||||| |||||||  ||  ||||| |||||| ||||||| ||| ||||| ||| |||||||| ||||| | ||||| ||| ||||||||||    
T  20202267 ctaagtgtatttttgcacatttttttcctattataccctcattttaattcactaataatttcatatttttttgcacacactttatcttttcaataaattt 20202168  T
Q  281 aatatgt 287  Q
    |||||||    
T  20202167 aatatgt 20202161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 317
Target Start/End: Original strand, 11825263 - 11825355
Alignment:
Q  225 taatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaa 317  Q
    |||||||| |||| |||| |||||||| ||||| | ||||| ||  |||||||||||||||||||| |||||||  ||| |||||||||||||    
T  11825263 taatccacaaatatattcttattttttggcacatactttatcttctcaataaatttaatatgttatttttatctcataaaaaacaattgtcaa 11825355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 14967914 - 14967822
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgt 314  Q
    ||||||||||||||||||||  ||||||||  |||| ||||| | |||| |||||||||||| |||||| ||| |||  ||||||||||||||    
T  14967914 ttttaatccaccaataaatttatatttttttacacacattttttctttcgaataaatttaatgtgttatttttctctcataacaaacaattgt 14967822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 347
Target Start/End: Original strand, 25612841 - 25612916
Alignment:
Q  272 aataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||||||||||||||||||| ||| ||| |||| ||||||| |  | |||| |||||||||||||||||||||||||    
T  25612841 aataaatttaatatgttatctttctctcgtaagaaacaatcgctagttattatctttttctccaacaaattcctat 25612916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 277
Target Start/End: Complemental strand, 17558398 - 17558305
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaa 277  Q
    |||||||||||||||||  |  ||  ||||| | |||| ||||||||||| ||||| |||||||||||| ||||| | |||||||||||||||||    
T  17558398 aagtgtatttttacacacatttttcctattatatcctcattttaatccactaataatttcctatttttt-gcacacactttatatttccaataaa 17558305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 32474564 - 32474523
Alignment:
Q  302 aacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    ||||||||||||||| |||| |||||||||||||||||||||    
T  32474564 aacaaacaattgtcacttattatctttttctccaacaaattc 32474523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 36244539 - 36244602
Alignment:
Q  188 tatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctatttttt 251  Q
    ||||||| ||||||| |||| ||||| || ||  |||||||||||||||||||| |||||||||    
T  36244539 tatttttgcacattttctttctattatactcttattttaatccaccaataaatttctatttttt 36244602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 37270156 - 37270031
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| |||  || || ||||||  |||||||||| |||| ||   |||||||| || || | |||||  ||| |||||||||||    
T  37270156 aagtgtatttttgcacattttcttcctactataccctcaatttaatccactaatatatctatatttttt-gctcacactttatcattctaataaatttaa 37270058  T
Q  283 tatgttatatttatctagtaacaaaca 309  Q
    |||||||||||| |||  |||||||||    
T  37270057 tatgttatatttttctcataacaaaca 37270031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 45647171 - 45647010
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    ||||||| || ||||||| |||  ||||| |||||| |||||||||  |||||||||| |||||||| ||||| | ||||| ||||||||||||||||||    
T  45647171 gtgtattcttgcacattttcttcctattataccctcattttaatccgtcaataaattcatatttttt-gcacacactttatctttccaataaatttaata 45647073  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||| ||| |||  |||||||||||||||| |||| |||||||||||||||||||||||||    
T  45647072 tgttatctttctctcataacaaacaattgtcacttattatctttttctccaacaaattcctat 45647010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 185 - 343
Target Start/End: Complemental strand, 2599636 - 2599478
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| |||||||  ||  ||||| |||||| ||||||||||||||||||||| || ||||| ||| |   ||||| ||||||||||||||||||    
T  2599636 gtgtatttttgcacattttattcctattataccctcattttaatccaccaataaattcatacttttttgcagactctttatctttccaataaatttaata 2599537  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    |||||| ||| ||| ||||||||| ||||||| |||| ||||||||| |||||||||||    
T  2599536 tgttatctttctctcgtaacaaaccattgtcagttattatctttttcaccaacaaattc 2599478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 347
Target Start/End: Complemental strand, 6749518 - 6749358
Alignment:
Q  186 tgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    ||||||||||||||||| |||| ||||| |||||||||||||| ||||||||||||| |||||||| || || |||||   ||  |||||||||||||||    
T  6749518 tgtatttttacacattttctttctattataccctcgttttaatgcaccaataaattcttatttttt-gcgcacattttcctttctcaataaatttaatat 6749420  T
Q  286 gttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||||| ||| ||| ||||||||||||| | | |||  |||| ||||||||||||||||||||    
T  6749419 gttatttttctcttgtaacaaacaatttttagttactatctctttctccaacaaattcctat 6749358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 335
Target Start/End: Complemental strand, 2094346 - 2094196
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| || |||| ||||||||||||||||||| ||||||||| | ||| | ||||| ||| ||| ||||||||||    
T  2094346 gtgtatttttgcacattttcttcctattatactctcggtttaatccaccaataaatttctatttttttggacacactttatcttttcaaaaaatttaata 2094247  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctcca 335  Q
    |||||| ||| ||| |||||||| |||||||| |||| |||||||||||||    
T  2094246 tgttatctttctctcgtaacaaataattgtcagttattatctttttctcca 2094196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 343
Target Start/End: Original strand, 16237033 - 16237191
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| |||||| ||||||||||  |||||||||||||||| | ||||| | ||||| | |||||||||||||| |    
T  16237033 gtgtattttttcacattttcttcctattataccctcattttaatccataaataaattcctattttcttgcacacactttatctctccaataaatttaaaa 16237132  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    |||||| ||| ||| ||||||||||| ||||| |||| |||||||||| |||| |||||    
T  16237133 tgttatttttctctcgtaacaaacaactgtcagttattatctttttcttcaaccaattc 16237191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 347
Target Start/End: Complemental strand, 45667989 - 45667851
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaac 308  Q
    ||||| ||| || ||||||||||||||||||||| |||||| | ||||| | ||||| ||| |||||||||||||||||||| ||| |   |||||||||    
T  45667989 tattataccttcattttaatccaccaataaattcttattttcttgcacacactttatcttttcaataaatttaatatgttatctttcttccgtaacaaac 45667890  T
Q  309 aattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||||| |||| || ||||||||||||||||||||||    
T  45667889 aattgtcagttattatatttttctccaacaaattcctat 45667851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 209 - 347
Target Start/End: Complemental strand, 27817993 - 27817850
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat-----gttatatttatctagtaa 303  Q
    ||||| |||||  |||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||     ||||| ||| | | ||||    
T  27817993 tattatacccttattttaatccaccaataaattcctatttttttgcacacattttatcttttcaataaatttaatataatatgttatctttcttttgtaa 27817894  T
Q  304 caaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||||||||| ||| |||| | |||||||||||||||||| ||||    
T  27817893 caaacaattatcagttattaactttttctccaacaaatttctat 27817850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 349
Target Start/End: Complemental strand, 34669257 - 34669092
Alignment:
Q  185 gtgtatttttacacatttcctttt-tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaat 283  Q
    |||||||||| |||||||  |||| ||||| || ||| |||||||||| ||||||||| ||| ||||| ||| | | ||||| ||| |||||||||||||    
T  34669257 gtgtatttttgcacatttttttttctattatactctcattttaatccatcaataaatttctacttttttgcagacactttattttttcaataaatttaat 34669158  T
Q  284 atgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctatat 349  Q
    ||| ||| ||| | | |||||| ||| ||||||||||| ||||||| | |||||||||||||||||    
T  34669157 atgatatctttcttttgtaacagacagttgtcaattattatcttttacaccaacaaattcctatat 34669092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 347
Target Start/End: Original strand, 6472283 - 6472441
Alignment:
Q  186 tgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    |||||||||||||||||  ||| ||||| |||||||||||||||||||||||||||| |||||||| || || |||||   ||  |||||||||||  ||    
T  6472283 tgtatttttacacattttttttctattataccctcgttttaatccaccaataaattcttatttttt-gcgcacattttcctttctcaataaattta--at 6472379  T
Q  286 gttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||||| ||| ||| ||||||||||||| | | |||  |||| ||||||||| ||||||||||    
T  6472380 gttatttttctcttgtaacaaacaatttttagttactatctctttctccaataaattcctat 6472441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 5494198 - 5494037
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| | |||| ||| | ||||||||||||||||| ||||||  | || | ||||| |||  |||||||||||||    
T  5494198 gtgtatttttgcacattttcttcctattatatcctcattt-actccaccaataaattccttttttttt-ctcacactttatctttataataaatttaata 5494101  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatca-tctttttctccaacaaattcctat 347  Q
    |||||| ||| ||| ||||||||||||||||| |||| | | ||||||||||| ||||||||||    
T  5494100 tgttatctttttctcgtaacaaacaattgtcacttattattttttttctccaataaattcctat 5494037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 19578590 - 19578487
Alignment:
Q  213 acaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaatt 312  Q
    |||||||| |||||||||| |||||||||||||||||||  |||||  ||| ||||||||||||||| |||||||||| ||| ||| |||||||||| ||    
T  19578590 acaccctcattttaatccaacaataaattcctattttttt-cacaa--tttctatttccaataaattcaatatgttatctttctcttgtaacaaacattt 19578494  T
Q  313 gtcaatt 319  Q
    || ||||    
T  19578493 gtaaatt 19578487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 267 - 345
Target Start/End: Complemental strand, 1405376 - 1405299
Alignment:
Q  267 tttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||||| | ||| | ||||||||||||||||||||||    
T  1405376 tttccaataaatttaatatgttatctttctctcgtaacaaacaattgttagtta-cttctttttctccaacaaattcct 1405299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 21916101 - 21916015
Alignment:
Q  223 tttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaaca 309  Q
    ||||| ||||||||| |||||||||||||  |||| | ||||| ||||||||||||||||||| |||||||| ||| ||||||||||    
T  21916101 tttaacccaccaatatattcctattttttgacacacactttatctttccaataaatttaatattttatatttttcttgtaacaaaca 21916015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 330
Target Start/End: Original strand, 45759127 - 45759248
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaac 308  Q
    ||||| ||||||  ||||||||||||||||||| |||||||||  |||| | ||||| ||| | |||||||||||||||||| ||| ||| || || |||    
T  45759127 tattataccctcaatttaatccaccaataaattactatttttttacacacactttattttttccataaatttaatatgttatctttctcttgtgacgaac 45759226  T
Q  309 aattgtcaattatcatcttttt 330  Q
    |||||||  |||| ||||||||    
T  45759227 aattgtcggttattatcttttt 45759248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 25841500 - 25841603
Alignment:
Q  178 taactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaa 277  Q
    |||| |||||||||||| |||||||  ||| ||||| |||||| ||||||| ||| ||||| ||||||||||||   ||| ||||||| |||||||||||    
T  25841500 taacaaagtgtatttttgcacattttttttctattataccctcattttaattcactaataatttcctatttttt---acacattttatctttccaataaa 25841596  T
Q  278 tttaata 284  Q
    |||||||    
T  25841597 tttaata 25841603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 9589340 - 9589211
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattccta---ttttttagcacaaattttatatttccaataaatt 279  Q
    |||||||||||| ||| ||| |||  ||||  |||||| |||||||||||||||| || |||    |||||| ||||||| ||| | ||| |||||||||    
T  9589340 aagtgtatttttgcactttttcttcctattgtaccctcattttaatccaccaatatataccttctttttttttgcacaaactttctcttttcaataaatt 9589241  T
Q  280 taatatgttatatttatctagtaacaaaca 309  Q
    ||||||||||| ||||||| ||||||||||    
T  9589240 taatatgttatttttatcttgtaacaaaca 9589211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 21933945 - 21934065
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| |||   |||| ||||||  |||||||||| |||| ||  ||||||||| |||||   ||||| ||||||||||||||||    
T  21933945 aagtgtatttttgcacattttcttacgattataccctcaatttaatccactaatatatctctattttttggcacac--tttatctttccaataaatttaa 21934042  T
Q  283 tatgttatatttatctagtaaca 305  Q
    |||||||||||| ||| ||||||    
T  21934043 tatgttatatttttctcgtaaca 21934065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 21959389 - 21959467
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| |||||| ||||||||||| ||||| |||||||||||| ||||| | |||||||||| ||||||| ||||||||    
T  21959389 tattataccctcattttaatccactaataatttcctatttttttgcacacactttatatttctaataaatataatatgt 21959467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 37030417 - 37030521
Alignment:
Q  190 tttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgtta 289  Q
    ||||| ||||||| |||  || || |||||| ||||||||||| |||||||| | ||| ||| ||| | | ||||| |||||||||||||||||||||||    
T  37030417 tttttgcacattttcttcctagtataccctcattttaatccactaataaatttcaattgttttgcaaacactttatctttccaataaatttaatatgtta 37030516  T
Q  290 tattt 294  Q
    |||||    
T  37030517 tattt 37030521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 42735097 - 42735185
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaa 310  Q
    |||||||||| ||||||||||||||||||| ||| | | ||||| |||   |||||||||||||||||| ||| ||| |||||||||||    
T  42735097 ttttaatccatcaataaattcctatttttttgcatacactttatctttttgataaatttaatatgttatttttttctcgtaacaaacaa 42735185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 315
Target Start/End: Original strand, 19229324 - 19229430
Alignment:
Q  208 ttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaa 307  Q
    |||||| |||||| ||||||||||| |||| |  |||||||||| ||||| | ||| | |||||||||||||||||||||||| ||| |||  |||||||    
T  19229324 ttattataccctcattttaatccactaatatacacctatttttt-gcacagactttctctttccaataaatttaatatgttatttttctctgataacaaa 19229422  T
Q  308 caattgtc 315  Q
    || |||||    
T  19229423 catttgtc 19229430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 38750496 - 38750618
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| |||  ||||| || |||  ||||||||||||||| ||   |||||||  ||||| | ||||| ||||||||||||||||    
T  38750496 aagtgtatttttgcacattttcttcctattatactctcaatttaatccaccaatatatctttatttttg-gcacacactttatctttccaataaatttaa 38750594  T
Q  283 tatgttatatttatctagtaacaa 306  Q
    ||||||||| || ||| |||||||    
T  38750595 tatgttataattttctcgtaacaa 38750618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 13779223 - 13779145
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| |||||| |||||||| || ||||| |||||||||||| |||||   ||||| |||||||||||||||||||||    
T  13779223 tattataccctcattttaatctactaataatttcctatttttttgcacaccctttatctttccaataaatttaatatgt 13779145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 314
Target Start/End: Complemental strand, 376259 - 376162
Alignment:
Q  217 cctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgt 314  Q
    |||| |||||||||| ||||| |||  |||||||| ||||| | ||| | ||||||| |||||||||||||||| ||| ||| |||||||||| ||||    
T  376259 cctcattttaatccatcaatatatttttatttttttgcacacactttctctttccaacaaatttaatatgttatctttctctggtaacaaacatttgt 376162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 312
Target Start/End: Original strand, 633074 - 633202
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| ||||  |||| || ||| ||||||||||||||||||||| || |||||  |||| | |||   |||| |||||||||||    
T  633074 aagtgtatttttccacattttctttcaattatactctcattttaatccaccaataaattcttacttttt-tcacacacttttcttttctaataaatttaa 633172  T
Q  283 tatgttatatttatctagtaacaaacaatt 312  Q
    |||||||| ||| ||| |||| ||| ||||    
T  633173 tatgttatctttctctcgtaataaataatt 633202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 283
Target Start/End: Complemental strand, 27264339 - 27264278
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaat 283  Q
    ||||||||||||||||||||||||||| || ||||| | | ||| |||||||||||| ||||    
T  27264339 ttttaatccaccaataaattcctatttatttgcacacactatatctttccaataaatctaat 27264278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 12568959 - 12568829
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttcc---aataaatt 279  Q
    |||||||||||| ||||||| ||| |||||| ||||    |||||||||  |||| ||| | |||||||  |||||  ||| | |||||   ||||||||    
T  12568959 aagtgtatttttgcacattttcttcttattataccc----tttaatccatgaatatatttccatttttttacacaagctttttctttccaataataaatt 12568864  T
Q  280 taatatgttatatttatctagtaacaaacaattgt 314  Q
    |||||| |||||||||||| |||||||||| ||||    
T  12568863 taatatattatatttatctcgtaacaaacatttgt 12568829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 314
Target Start/End: Complemental strand, 13545423 - 13545293
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttcc---aataaatt 279  Q
    |||||||||||| ||||||| ||| |||||| ||||    |||||||||  |||| ||| | |||||||  |||||  ||| | |||||   ||||||||    
T  13545423 aagtgtatttttgcacattttcttcttattataccc----tttaatccatgaatatatttccatttttttacacaagctttttctttccaataataaatt 13545328  T
Q  280 taatatgttatatttatctagtaacaaacaattgt 314  Q
    |||||| |||||||||||| |||||||||| ||||    
T  13545327 taatatattatatttatctcgtaacaaacatttgt 13545293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 297030 - 296868
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    ||||||||||||  |||||| |||  || || |||||| |||||  ||||||||| ||| ||||||||| ||||| | ||| | ||| |||| |||||||    
T  297030 aagtgtatttttgtacattttcttcctactataccctcattttataccaccaatatatttctatttttttgcacacactttctcttttcaattaatttaa 296931  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    || | ||| |||  ||  ||||||||| |||| | |||  ||||||||  |||||||||||||    
T  296930 tacggtatctttcgctcataacaaacatttgttagttactatcttttttaccaacaaattcct 296868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 7259367 - 7259445
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| |||||| ||||||||||| ||||| ||  |||||||| ||||  | ||||| ||||||||||| |||||||||    
T  7259367 tattataccctcattttaatccactaataattttttatttttttgcacccactttatctttccaataaaattaatatgt 7259445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1986 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 185 - 350
Target Start/End: Complemental strand, 722 - 557
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    ||||| |||||||||||| |||| ||||| |||||  |||||||||||||||||||| |||||||||  |||| | ||||| ||||||||||||| | ||    
T  722 gtgtacttttacacattttctttctattataccctaattttaatccaccaataaatttctatttttttacacacactttatctttccaataaattaagta 623  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctatatt 350  Q
    |||||| ||| ||| |||| ||||| |||||  |||| ||||||||||||||||||||||||||||    
T  622 tgttatctttctctcgtaataaacacttgtctgttattatctttttctccaacaaattcctatatt 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 191 - 342
Target Start/End: Original strand, 2437273 - 2437424
Alignment:
Q  191 ttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttat 290  Q
    |||| ||||||| |||  ||||| ||| || |||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||    
T  2437273 ttttgcacattttcttcctattataccatcattttaatccaccaataaattcctatttttttgcacacactttatctttccaataaatttaatatgttat 2437372  T
Q  291 atttatctagtaacaaacaattgtcaattatcatctttttctccaacaaatt 342  Q
     | | |||  |||||||| |||||||||||| |||||||||| |||||||||    
T  2437373 ctatctctcataacaaactattgtcaattattatctttttcttcaacaaatt 2437424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 343
Target Start/End: Complemental strand, 8049938 - 8049778
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctatttttta--gcacaaattttatatttccaataaatttaa 282  Q
    |||| ||||| ||||||| |||  ||||| |||||| |||| |||||||||||||||| ||||||||   ||||| | ||||||||||||||||||||||    
T  8049938 gtgtgtttttgcacattttcttcctattataccctcattttgatccaccaataaattcttatttttttttgcacacactttatatttccaataaatttaa 8049839  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    |||||||| ||| |||  |||||||||||||| | |||| ||||||||||||| |||||||    
T  8049838 tatgttatctttctctcataacaaacaattgttacttattatctttttctccatcaaattc 8049778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 185 - 342
Target Start/End: Original strand, 14093252 - 14093409
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| |||||| |||||||||| ||||||| | ||||||||| ||||| | |||||  |||||||||||||||||    
T  14093252 gtgtatttttgcacattttcttcctattataccctcattttaatccatcaataaacttctatttttttgcacacactttatccttccaataaatttaata 14093351  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaatt 342  Q
    ||| || ||| ||| ||||||||||||||||  |||| |||||||||| |||||||||    
T  14093352 tgtcatctttctctcgtaacaaacaattgtcggttattatctttttctacaacaaatt 14093409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 209 - 345
Target Start/End: Complemental strand, 23411086 - 23410950
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaac 308  Q
    ||||| |||||| |||||||||||||||| ||||||||||||| ||| | | ||| | |||||||||||||||||||||||| ||| ||| ||||||||     
T  23411086 tattataccctcattttaatccaccaatatattcctatttttttgcatacactttctctttccaataaatttaatatgttatctttctctcgtaacaaat 23410987  T
Q  309 aattgtcaattatcatctttttctccaacaaattcct 345  Q
    | || | | |||  |||||||||||||||||||||||    
T  23410986 atttcttagttactatctttttctccaacaaattcct 23410950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 7972293 - 7972402
Alignment:
Q  178 taactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaa 277  Q
    |||| |||||||||||| |||| ||  ||| ||||| |||||| ||||||||||| ||||| |||||||||||| ||||| ||||||| |||||||||||    
T  7972293 taacgaagtgtatttttgcacactttttttctattataccctcattttaatccactaataatttcctatttttttgcacacattttatctttccaataaa 7972392  T
Q  278 tttaatatgt 287  Q
    ||||||||||    
T  7972393 tttaatatgt 7972402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 8049757 - 8049675
Alignment:
Q  261 tttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    |||||||||||||||||||||||||||||| ||| |||  ||||||||||||||   |||| |||||||||||||||||||||    
T  8049757 tttatatttccaataaatttaatatgttatctttctctcataacaaacaattgttgcttattatctttttctccaacaaattc 8049675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 21526960 - 21527064
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| |||| ||  ||  |||||||||||| ||||||||||| ||||| |||||||||||| ||||| | ||||| ||| ||||||||||||    
T  21526960 aagtgtatttttgcacacttttttcctattacaccctcattttaatccactaataatttcctatttttttgcacacactttatcttttcaataaatttaa 21527059  T
Q  283 tatgt 287  Q
    |||||    
T  21527060 tatgt 21527064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 26252049 - 26252174
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    ||||||||||||  |||||| |||  ||||| ||||||  ||||||| ||||||| ||  ||||||||| ||||| | ||||| |||| |||||||||||    
T  26252049 aagtgtatttttgtacattttcttcctattataccctcaatttaatc-accaatatatctctattttttggcacacactttatctttctaataaatttaa 26252147  T
Q  283 tatgttatatttatctagtaacaaaca 309  Q
    |||||||||||| ||| ||||||||||    
T  26252148 tatgttatatttttctcgtaacaaaca 26252174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 344
Target Start/End: Complemental strand, 25057140 - 25056985
Alignment:
Q  187 gtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatg 286  Q
    ||||||||| |||||| |||  ||||| ||| ||  ||||||||| |||||||||| |||||||| ||||| | ||||| ||||||||||||||||| ||    
T  25057140 gtatttttatacattttcttcctattataccttcaatttaatccatcaataaattcttatttttt-gcacacactttatctttccaataaatttaatgtg 25057042  T
Q  287 ttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcc 344  Q
    |||| ||| |||  ||||||||| ||||   |||| || |||||||| ||||||||||    
T  25057041 ttatctttctctcataacaaacagttgt-ggttattatatttttctctaacaaattcc 25056985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 6110663 - 6110794
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||||||||||| |||| ||||| ||  || ||||||||||| ||| ||||  |||||| | ||||| | |||   ||| ||||||||||||    
T  6110663 aagtgtatttttacacattttctttctattatactttcattttaatccactaatgaattattattttcttgcacacactttccgttttcaataaatttaa 6110762  T
Q  283 tatgttatatttatctagtaacaaacaattgt 314  Q
    ||||| || ||| ||| |||||||||||||||    
T  6110763 tatgtcatctttctcttgtaacaaacaattgt 6110794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 31656168 - 31656042
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    ||||||||||| |||||||| |||| ||||| |||||| |||||||  ||||||| |||| |||||||  | ||| || || | ||| ||||||||||||    
T  31656168 aagtgtattttaacacattttctttctattataccctcattttaatttaccaatagattcatatttttctggacacatgttctcttttcaataaatttaa 31656069  T
Q  283 tatgttatatttatctagtaacaaaca 309  Q
    | |||||||||| |||  |||||||||    
T  31656068 tgtgttatatttctctcataacaaaca 31656042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 6026619 - 6026522
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaattta 281  Q
    |||||||| ||| ||| ||| |||| ||||| || ||| ||||||||||| |||| |||| ||||||||| |||| | ||| | |||||||||||||||    
T  6026619 aagtgtatgtttgcactttttctttctattatactctcattttaatccacgaatatattcatatttttta-cacacactttctctttccaataaattta 6026522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 21013164 - 21013243
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttat 290  Q
    ||||| |||||||||| ||||||||||| ||||  |||||||| ||||||| ||||| | |||||||||||| || ||||||    
T  21013164 tattataccctcgttt-aatccaccaatcaatttttatttttt-gcacaaaatttatctctccaataaatttcatgtgttat 21013243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 343
Target Start/End: Complemental strand, 31661027 - 31660870
Alignment:
Q  186 tgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    |||||||| ||| |||| |||  ||||| ||| || |||||||| ||||||  |||||||| |||  | ||| | ||| | ||||||||||||||||| |    
T  31661027 tgtattttaacatattttcttcctattataccttcattttaatctaccaattgattcctatctttctggacacactttctctttccaataaatttaatgt 31660928  T
Q  286 gttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    ||||| ||| |||  || |||||||| || | |||   ||||||||| ||||||||||    
T  31660927 gttatctttctctcatagcaaacaatcgttagttactctctttttcttcaacaaattc 31660870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 343
Target Start/End: Complemental strand, 9808195 - 9808039
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| | |||| ||||||||||| |||||||||||||||||| ||||| | ||||| |||| |||||||||||||    
T  9808195 gtgtattttt-cacattttcttcctattatatcctcattttaatccactaataaattcctatttttt-gcacacactttatctttctaataaatttaata 9808098  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    |||||| ||| ||| ||||||||||||| ||| |||| |||||||||||||||||||||    
T  9808097 tgttatctttctctcgtaacaaacaattatcagttattatctttttctccaacaaattc 9808039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 24073374 - 24073511
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| |||  || || || |||||||||||||||||||||||| |||||| || ||||| | ||||| ||| ||||||||||||    
T  24073374 aagtgtatttttgcacattttcttcctaatatactctcgttttaatccaccaataaatttctatttctttgcacacactttatcttttcaataaatttaa 24073473  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaatta 320  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  24073474 tatgttatatttctctcgtaacaaacaattgtcaatta 24073511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 188 - 347
Target Start/End: Original strand, 38839943 - 38840100
Alignment:
Q  188 tatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||||| ||||||| |||| ||||| ||| |  |||||||||||||||||||| ||||||||| ||||| |  |||| ||||||||||||||||||| |    
T  38839943 tatttttgcacattttctttctattatacc-taattttaatccaccaataaatttctatttttt-gcacacaccttatctttccaataaatttaatatat 38840040  T
Q  288 tatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||| ||| ||| ||||||||||| ||||| |||| ||||||||||| |||||||||||||    
T  38840041 tatctttttcttgtaacaaacaaatgtcagttattatctttttctcaaacaaattcctat 38840100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 45666884 - 45666724
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| |||||| |||||||||||||||||||||||||||||| ||||| | ||||| ||| ||||||| |||| |    
T  45666884 gtgtatttttgcacattttcttcctattataccctcattttaatccaccaataaattcctatttttttgcacacactttatcttttcaataaaattaaca 45666785  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||  ||| | ||| ||||||||||||||| | || | |||||||||||||||||||| ||||    
T  45666784 tgt--tatctctcttgtaacaaacaattgttagttgttatctttttctccaacaaatttctat 45666724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 210 - 345
Target Start/End: Original strand, 49299389 - 49299524
Alignment:
Q  210 attacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaaca 309  Q
    |||| |||||| |||||||||| ||||||||| ||||||||| ||||  | ||||| |||||||||||||||||||||||| |||  || ||||||||||    
T  49299389 attataccctcattttaatccatcaataaattactatttttttgcactcactttatttttccaataaatttaatatgttatctttcactcgtaacaaaca 49299488  T
Q  310 attgtcaattatcatctttttctccaacaaattcct 345  Q
    ||||||| |||| |||||||| || |||||||||||    
T  49299489 attgtcagttattatctttttatctaacaaattcct 49299524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 347
Target Start/End: Original strand, 54982199 - 54982361
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctatttttta-gcacaaattttatatttccaataaatttaat 283  Q
    |||||||||| ||| ||| |||| |||||  ||||| ||||||||||| |||||||| |||||||||  ||||| | ||||| ||||||||||||| |||    
T  54982199 gtgtatttttgcacgttttctttctattatgccctcattttaatccac-aataaatttctattttttttgcacatactttatctttccaataaattcaat 54982297  T
Q  284 atgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    | ||||||||| ||  ||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  54982298 aagttatatttctcacgtaacaaacaattatcagttattatctttttctccaacaaattcctat 54982361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 339
Target Start/End: Complemental strand, 17330995 - 17330842
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| |||||  ||||||| || |||||||||||||||||||  |||| | ||||| ||||||||||||||||||    
T  17330995 gtgtatttttgcacattttcttcctattataccctaattttaatgcatcaataaattcctattttttt-cacacactttatctttccaataaatttaata 17330897  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaa 339  Q
    | |||| ||| ||| | |||||||||||||   |||| ||||||| |||||||||    
T  17330896 tattatttttctctcgaaacaaacaattgtttgttattatcttttcctccaacaa 17330842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 343
Target Start/End: Complemental strand, 53393949 - 53393792
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||  || ||  ||||||||||||  |||||||||||| ||| ||||| | ||||| | | |||||| |||||||    
T  53393949 gtgtatttttgcacattttcttcatattctactcttattttaatccacctttaaattcctattattttgcacacactttatctattcaataattttaata 53393850  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    |||||||||| ||| |||| |||||||||||| |||| ||| |||||||||||||||||    
T  53393849 tgttatatttttcttgtaataaacaattgtcagttattatc-ttttctccaacaaattc 53393792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 343
Target Start/End: Original strand, 19443092 - 19443235
Alignment:
Q  188 tatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||||| ||||||| |||  ||||| |||||| |||||||||||||||||||| ||||||      ||| ||||||| |||||||||||||||||||||    
T  19443092 tatttttgcacattttcttcctattataccctcattttaatccaccaataaatttctattta-----acacattttatctttccaataaatttaatatgt 19443186  T
Q  288 tatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    ||| ||| | | ||||||||       ||||||| |||||||||||||||||||||    
T  19443187 tatgtttctttcgtaacaaa-------caattattatctttttctccaacaaattc 19443235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 47944003 - 47944111
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| |||||| |||||||||||||||||||||||||||     |||| | ||||| |||| |||||||||||||    
T  47944003 gtgtatttttgcacattttcttcctattataccctcattttaatccaccaataaattcctattt-----cacacactttatctttctaataaatttaata 47944097  T
Q  285 tgttatatttatct 298  Q
    |||||| |||||||    
T  47944098 tgttatgtttatct 47944111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 25494299 - 25494215
Alignment:
Q  261 tttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||||||||| |||||||||||||  ||||| || ||||  |||||||||||||||| |||| |||||||||||||||||||||||||    
T  25494299 tttatattttcaataaatttaat--gttatcttcatctcataacaaacaattgtcatttattatctttttctccaacaaattcctat 25494215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 41503141 - 41503030
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| |||  ||||| ||||||  ||||||||||||||| |||  ||| |||| ||||| | ||||| |||| |||||||||||    
T  41503141 aagtgtatttttgcacattttcttcctattataccctcaatttaatccaccaatatatttatatattttggcacacactttatctttctaataaatttaa 41503042  T
Q  283 tatgttatattt 294  Q
    ||||||||||||    
T  41503041 tatgttatattt 41503030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 209 - 283
Target Start/End: Original strand, 46430468 - 46430542
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaat 283  Q
    |||||||| ||| |||||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||    
T  46430468 tattacactctcattttaatctaccaataaatttctattttttagcacacactttatctttccaataaatttaat 46430542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 9089141 - 9089214
Alignment:
Q  273 ataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattccta 346  Q
    ||||||||||||||||||| || ||| |||||||| |||||||  |||| ||||||||||||||||||||||||    
T  9089141 ataaatttaatatgttatagttctctcgtaacaaataattgtcggttattatctttttctccaacaaattccta 9089214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 340
Target Start/End: Complemental strand, 49263649 - 49263490
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcc--tattttttagcacaaattttatatttccaataaattt 280  Q
    |||||||||||| ||||||| |||  ||||| |||||  ||||||||||| ||||||||||  | ||||||  |||| ||||||| ||||||||||||||    
T  49263649 aagtgtatttttgcacattttcttcctattagaccctgattttaatccactaataaattccttttttttttctcacacattttatctttccaataaattt 49263550  T
Q  281 aatatgttatatttatctagtaacaa--acaattgtcaattatcatctttttctccaacaaa 340  Q
    |  ||||||| ||| ||| |||||||  | |||||| |  ||| ||||||||||||||||||    
T  49263549 a--atgttatttttctctcgtaacaaatataattgttagctattatctttttctccaacaaa 49263490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 347
Target Start/End: Original strand, 34031511 - 34031675
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattc---ctattttttagcacaaattttatatttccaataaattta 281  Q
    |||||||||| ||||||| |||  ||||| |||||| |||||||||||||||||||||    | |||||| ||||| | ||||| ||| ||  |||||||    
T  34031511 gtgtatttttgcacattttcttcctattataccctcattttaatccaccaataaattcaatttttttttttgcacacactttatcttttcaggaaattta 34031610  T
Q  282 atatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    | ||||||| ||| ||| ||||||||||||||| |  ||  |||||||| |||||| |||||||||    
T  34031611 acatgttatcttt-tctcgtaacaaacaattgttagataatatctttttatccaactaattcctat 34031675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 6949532 - 6949450
Alignment:
Q  261 tttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    ||||| |||||||||||||||||||||||| |||   |  |||||||||||||||  |||| |||||||||||||||||||||    
T  6949532 tttatctttccaataaatttaatatgttatctttcgttcataacaaacaattgtcggttataatctttttctccaacaaattc 6949450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 38433908 - 38433985
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| |||||| ||||||||||| ||||| |||||||||||| ||||| | ||||| |||||||||||||||||||||    
T  38433908 tattataccctcattttaatccactaataatttcctatttttt-gcacacactttatctttccaataaatttaatatgt 38433985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 37209624 - 37209721
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattat 321  Q
    ||||||||| ||||||||||| |||| ||| ||||| | ||||| ||| |||||||||||||||||  || || ||| | ||||||||||||||||||||    
T  37209624 ttttaatccgccaataaattcttattcttttgcacacactttatcttttcaataaatttaatatgt--tacttttctcggaacaaacaattgtcaattat 37209721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 314
Target Start/End: Complemental strand, 50721509 - 50721384
Alignment:
Q  188 tatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    |||||||  |||||| |||  ||||| |||||  ||| |||| |||||||||||  || ||||| ||||| | ||||| |||||| ||||||||||||||    
T  50721509 tatttttgtacattttcttcctattatacccttatttcaatctaccaataaatttttagttttt-gcacacactttatctttccactaaatttaatatgt 50721411  T
Q  288 tatatttatctagtaacaaacaattgt 314  Q
    ||| ||| ||| |||||||||||||||    
T  50721410 tatctttctctcgtaacaaacaattgt 50721384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 347
Target Start/End: Original strand, 1821114 - 1821267
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccacca---ataaattcctattttttagcacaaattttatatttccaataaattta 281  Q
    |||||||||| ||||||| |||  ||||| |||||| |||||||||||||   |||||||| |||||     |||| | ||||| |||||||||||||||    
T  1821114 gtgtatttttgcacattttcttcctattataccctcattttaatccaccaccaataaattcgtattt-----cacacactttatctttccaataaattta 1821208  T
Q  282 atatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||||||||| ||| ||   |||||| |||||       || |||||||||||||||||||||||||    
T  1821209 atatgttatgtttctcctttaacaaccaatt-------attatctttttctccaacaaattcctat 1821267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 20782991 - 20782914
Alignment:
Q  215 accctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatat 292  Q
    |||||| |||||||||||||||||| || |||||||   |||| ||||| | ||| ||||||||||||||||||||||    
T  20782991 accctcattttaatccaccaataaaatcatatttttctacacacattttctcttttcaataaatttaatatgttatat 20782914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 281
Target Start/End: Original strand, 9088788 - 9088884
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaattta 281  Q
    ||||||| || ||||||| |||  ||||| |||||| |||||||||||||| |||||| | |||||| ||||| | || || |||||||||||||||    
T  9088788 gtgtattcttgcacattttcttcctattataccctcattttaatccaccaaaaaattcttttttttttgcacacacttcatttttccaataaattta 9088884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 340
Target Start/End: Complemental strand, 33809418 - 33809356
Alignment:
Q  278 tttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaa 340  Q
    |||| |||||||| ||||| | ||||||||||||||| | |||| ||||||||||||||||||    
T  33809418 tttactatgttatttttatatcgtaacaaacaattgttagttattatctttttctccaacaaa 33809356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 55344137 - 55344059
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| |||||| ||||||||||| ||||| ||||||| |||| ||||| | ||||| | || ||||||||||||||||    
T  55344137 tattataccctcattttaatccactaataatttcctatatttttgcacacactttatctgtctaataaatttaatatgt 55344059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 53370161 - 53370222
Alignment:
Q  253 gcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgt 314  Q
    ||||||||||| | ||| |||||||||||||||||||||||| ||| |||| ||||| ||||    
T  53370161 gcacaaattttctcttttcaataaatttaatatgttatatttctctcgtaataaacatttgt 53370222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 24537984 - 24538047
Alignment:
Q  223 tttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    |||||||||| ||||| ||||||||||||  |||| | ||||| |||||||||||||||||||||    
T  24537984 tttaatccactaataatttcctattttttt-cacacactttatctttccaataaatttaatatgt 24538047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 309
Target Start/End: Complemental strand, 33890189 - 33890060
Alignment:
Q  178 taactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaa 277  Q
    |||| ||||||||||||||| |||| |||  ||||| ||||||  ||||||||||||||| ||  |||||||||     | | | ||| |||||||||||    
T  33890189 taacaaagtgtatttttacatattttcttcctattataccctcaatttaatccaccaatatatctctattttttttattacactctatctttccaataaa 33890090  T
Q  278 tttaatatgttatatttatctagtaacaaaca 309  Q
    ||||  ||||||||||| ||| ||||||||||    
T  33890089 ttta--atgttatatttttctcgtaacaaaca 33890060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 341
Target Start/End: Complemental strand, 46250394 - 46250277
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattat 321  Q
    |||||||||||||||| |||| ||||||||  |||| | ||| | ||||||||||||| | ||| |||| ||| | | |||| |||||||||| || ||     
T  46250394 ttttaatccaccaatatattcatatttttt-tcacacactttctctttccaataaattgagtatattatctttttttcgtaagaaacaattgttaa-tac 46250297  T
Q  322 catctttttctccaacaaat 341  Q
     |||||||||||||||||||    
T  46250296 tatctttttctccaacaaat 46250277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 2685200 - 2685132
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctatttttt 251  Q
    |||||||||||| ||||||| ||| |||||| | | || |||||| |||||||||||||  ||||||||    
T  2685200 aagtgtatttttgcacattttcttcttattatatcttcattttaaaccaccaataaatttttatttttt 2685132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 209 - 347
Target Start/End: Complemental strand, 41117542 - 41117404
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaac 308  Q
    ||||| |||||| ||||||||||||||||||||  |||||||| ||||| | ||||| |||||||||||||||||||||||| ||| ||| |||||||||    
T  41117542 tattataccctcattttaatccaccaataaatttttatttttttgcacacactttatctttccaataaatttaatatgttatctttctctcgtaacaaac 41117443  T
Q  309 aattgtcaattatcatctttttctccaacaaattcctat 347  Q
    ||  |||| |||| |||||||||| ||||||||||||||    
T  41117442 aaacgtcacttattatctttttcttcaacaaattcctat 41117404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 185 - 342
Target Start/End: Original strand, 6295234 - 6295391
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||| ||||| |||||| | ||| |||||||||||||| |||||||||  |||| ||||||| |||| || ||||||||||    
T  6295234 gtgtatttttgcacattttctttctattataccctcatgttactccaccaataaatttctatttttttacacacattttatctttctaaaaaatttaata 6295333  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaatt 342  Q
    |||||| ||| ||| ||||||||||||||||  |||| || |||||||||||||||||    
T  6295334 tgttatctttctctcgtaacaaacaattgtcggttattatttttttctccaacaaatt 6295391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 185 - 345
Target Start/End: Original strand, 13254189 - 13254349
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  |||||  | ||| |||||||||| |||||||||||||||||||  |||| | | ||| ||||||||||||||||||    
T  13254189 gtgtatttttgcacattttcttcatattatgctctcattttaatccatcaataaattcctattttttttcacacactatatctttccaataaatttaata 13254288  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    |||||| ||| ||| ||||||||||||||||| || | |||||||||||||| ||||||||    
T  13254289 tgttatttttctctcgtaacaaacaattgtcagtttttatctttttctccaaaaaattcct 13254349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 36319483 - 36319616
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| || ||| ||||||||||||| ||| |||| ||||||| ||||| |  |||| ||||||||||||||||||    
T  36319483 gtgtatttttgcacattttcttcctattatactctcattttaatccacca-taagttccaatttttttgcacacaccttatctttccaataaatttaata 36319581  T
Q  285 tgttatatttatctagtaacaaacaattgtcaatt 319  Q
    |||||||||||||| ||||||||||||||||||||    
T  36319582 tgttatatttatctcgtaacaaacaattgtcaatt 36319616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 52415732 - 52415605
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctatttttt-agcacaaattttatatttccaataaattta 281  Q
    |||||||||||||||||||| |||  ||||| ||||||  ||||||||||||||| || ||||||||||  ||||| | ||| | |||||||||||||||    
T  52415732 aagtgtatttttacacattttcttcctattataccctcaatttaatccaccaatatatccctattttttcggcacacactttttctttccaataaattta 52415633  T
Q  282 atatgttatatttatctagtaacaaaca 309  Q
    ||||||||||||| ||| ||||||||||    
T  52415632 atatgttatatttttctcgtaacaaaca 52415605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 342
Target Start/End: Complemental strand, 45925953 - 45925834
Alignment:
Q  223 tttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatc 322  Q
    ||||||||||||||| ||||||||||||| ||||| | ||| | ||| |||||||||||||||||||| ||| |||  ||||||||| |||| | ||||     
T  45925953 tttaatccaccaatatattcctatttttttgcacacactttctcttttcaataaatttaatatgttatctttctctcctaacaaacatttgttagttatt 45925854  T
Q  323 atctttttctccaacaaatt 342  Q
    ||||||||||||||| ||||    
T  45925853 atctttttctccaaccaatt 45925834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 343
Target Start/End: Original strand, 10430125 - 10430284
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| || ||||  ||||||||| | |||  |||||||||||||||| ||||||| ||||| ||||| | ||| | ||||||||||||||||    
T  10430125 aagtgtatttttgcaaatttaatttttattatatccttattttaatccaccaatatattcctacttttt-gcacacactttttctttccaataaatttaa 10430223  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    || ||||| ||| |||  ||||||| |||||| | |||  ||||||||||||||| |||||    
T  10430224 tacgttatctttctctcataacaaataattgttagttactatctttttctccaaccaattc 10430284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 183 - 307
Target Start/End: Original strand, 23698884 - 23699008
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| |||  ||||| |  |||  ||||||||||||||| |||| |||||||| ||||| | ||||| ||| |||| |||||||    
T  23698884 aagtgtatttttgcacattttcttcctattataatctcaatttaatccaccaatatattcttattttttggcacacactttatcttttcaatgaatttaa 23698983  T
Q  283 tatgttatatttatctagtaacaaa 307  Q
    |||||||||||||||| ||||||||    
T  23698984 tatgttatatttatcttgtaacaaa 23699008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 11795508 - 11795629
Alignment:
Q  187 gtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatg 286  Q
    |||||||| ||||||| |||  ||||| |||||| |||||||||||||||| ||| || |||||| ||||| | ||| | ||||||||||||||||||||    
T  11795508 gtatttttgcacattttcttcatattataccctcattttaatccaccaatatattactttttttt-gcacacactttctctttccaataaatttaatatg 11795606  T
Q  287 ttatatttatctagtaacaaaca 309  Q
    |||||||| |||  |||||||||    
T  11795607 ttatatttttcttataacaaaca 11795629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 40518621 - 40518747
Alignment:
Q  178 taactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaa 277  Q
    |||| |||||||||||| ||||||| |||  ||||| ||||||  ||||||| || |||| ||  ||||||||| |||||   |||||||||||||||||    
T  40518621 taacaaagtgtatttttgcacattttcttcctattataccctcaatttaatctactaatatatctctattttttggcacac--tttatatttccaataaa 40518718  T
Q  278 tttaatatgttatatttatctagtaacaa 306  Q
    ||||||||||||||||| ||| |||||||    
T  40518719 tttaatatgttatatttttctcgtaacaa 40518747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 1394936 - 1394831
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||||||| |||| ||| | |||||| |||||||||||||||| |||||||||||||  | || | ||| | ||||||||||||||||    
T  1394936 aagtgtattttttcacattttctttctatcataccctcattttaatccaccaatatattcctattttttt-cgcacactttctttttccaataaatttaa 1394838  T
Q  283 tatgtta 289  Q
    |||||||    
T  1394837 tatgtta 1394831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 336
Target Start/End: Complemental strand, 19270257 - 19270107
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    ||||||||| || |||||||   | |||||| |||||| ||||||||||||||||||||  |||||||| ||| ||| ||| | ||||||||||||||||    
T  19270257 aagtgtattattgcacatttttgtcttattataccctcattttaatccaccaataaattgttatttttt-gcataaactttctctttccaataaatttaa 19270159  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaa 336  Q
    ||  || ||| | ||| ||||||||||||||| | |||  ||||||||||||||    
T  19270158 ta--ttttatctctctcgtaacaaacaattgttagttactatctttttctccaa 19270107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 311
Target Start/End: Complemental strand, 39387075 - 39386986
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaat 311  Q
    ||||||||||| |||||||||||| ||||| ||||| | ||||| |||| ||||||||| ||||||||| ||| ||| ||||| ||||||    
T  39387075 ttttaatccacgaataaattcctacttttttgcacacactttatctttcgaataaattttatatgttatctttctcttgtaaccaacaat 39386986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 343
Target Start/End: Complemental strand, 2752237 - 2752078
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    ||||||||||||  |||||| |||  ||||| |||||| |||||||| |||||||| ||  |||||||| ||||| | ||| | |||| ||||||||| |    
T  2752237 aagtgtatttttgtacattttcttcctattataccctcattttaatcgaccaataagtttatatttttt-gcacacactttctctttcaaataaatttta 2752139  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    | |||| | ||| ||| |||| |||||||||| |||||   ||||||||| ||||||||||    
T  2752138 tgtgttgtctttctcttgtaataaacaattgttaattactttctttttcttcaacaaattc 2752078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 32769569 - 32769462
Alignment:
Q  188 tatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttag-cacaaattttatatttccaataaatttaatatg 286  Q
    ||||||| ||||||| |||  ||||| | ||||  ||||||||||||||| ||  ||||||||| | |||| | ||||| ||||||||||||||||||||    
T  32769569 tattttttcacattttcttcctattatatcctcaatttaatccaccaatatatctctatttttttggcacacactttatctttccaataaatttaatatg 32769470  T
Q  287 ttatattt 294  Q
    ||||||||    
T  32769469 ttatattt 32769462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 11237660 - 11237738
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| ||| || ||||||||||| ||||| || | ||||||| ||||| ||||||| |||||||||||||||||||||    
T  11237660 tattataccatcattttaatccactaataattttcaatttttttgcacacattttatctttccaataaatttaatatgt 11237738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 350
Target Start/End: Original strand, 21965692 - 21965833
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaac 308  Q
    ||||| |||||||| ||||||   ||||||||| ||||||||| ||||| | ||| | | |||||||||| |||| |||||| ||| |||  ||||||||    
T  21965692 tattataccctcgtgttaatctgtcaataaatttctattttttggcacacactttctttgtccaataaatataatgtgttatctttctcttataacaaac 21965791  T
Q  309 aattgtcaattatcatctttttctccaacaaattcctatatt 350  Q
    |||||| | | |   ||||||||| |||||||||| ||||||    
T  21965792 aattgttagtcactctctttttcttcaacaaattcttatatt 21965833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 31622813 - 31622922
Alignment:
Q  178 taactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaa 277  Q
    |||| |||||||||||| |||||||   |  |||||  ||||| ||||| ||||| ||||| |||||||||||| ||||| | ||||| ||| |||||||    
T  31622813 taacgaagtgtatttttgcacatttttctcctattattccctcattttactccactaataatttcctatttttttgcacacactttatctttacaataaa 31622912  T
Q  278 tttaatatgt 287  Q
    ||||||||||    
T  31622913 tttaatatgt 31622922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 43021531 - 43021437
Alignment:
Q  189 atttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    |||||| ||||||| |||| ||||| |||||   ||||||||||||||| |||| |||||||| ||||  | ||| | |||||||||||||||||||    
T  43021531 atttttgcacatttactttctattatacccttagtttaatccaccaatatattcatatttttttgcac--actttctctttccaataaatttaatat 43021437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 283
Target Start/End: Original strand, 4395569 - 4395669
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||| ||| |||  ||||| ||| || |||||||||||||||| ||||||||||||   | || | ||| | ||||||||||||||||    
T  4395569 aagtgtattttttcaccttttcttcctattataccatcattttaatccaccaatatattcctatttttctacgcacactttctctttccaataaatttaa 4395668  T
Q  283 t 283  Q
    |    
T  4395669 t 4395669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 4671920 - 4671872
Alignment:
Q  261 tttatatttccaataaatttaatatgttatatttatctagtaacaaaca 309  Q
    ||||| |||||||||||||||| ||||||||||| ||| ||||||||||    
T  4671920 tttatctttccaataaatttaacatgttatatttttctcgtaacaaaca 4671872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 43021378 - 43021314
Alignment:
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||||| ||| |||  ||| |||||||||| | |||  |||||||||||||||||||||||||    
T  43021378 tatgttatttttctctcataataaacaattgttagttaatatctttttctccaacaaattcctat 43021314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 52957702 - 52957634
Alignment:
Q  279 ttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||| ||||||| || |||| |||||||||| |||| | |||  |||||||||||||||||||| ||||    
T  52957702 ttaacatgttatcttcatcttgtaacaaacatttgttagttaatatctttttctccaacaaatttctat 52957634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 185 - 345
Target Start/End: Complemental strand, 257364 - 257205
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||||||||||| |||  ||||| |||||| | |||||||| ||||||||||||||||||| ||||| | ||||| ||| ||||||||||||||    
T  257364 gtgtatttttacacattttcttcctattataccctcatattaatccatcaataaattcctatttttttgcacacactttatcttttcaataaatttaata 257265  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    ||||||  || ||| | |||||||||||| || |||| |||||||||| |||| |||||||    
T  257264 tgttatccttctctcgaaacaaacaattg-cagttattatctttttcttcaacgaattcct 257205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 271918 - 272006
Alignment:
Q  200 tttcctttttattacaccctcgttttaatccaccaataaattc-ctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    |||||||| ||||| |||||| ||||||||||| ||||| |||  | ||||||  |||| | ||||| ||| |||||||||||||||||    
T  271918 tttcctttctattataccctcattttaatccactaataatttcttttttttttttcacacactttatcttttcaataaatttaatatgt 272006  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 11084477 - 11084315
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||| |||||| |||||| |||  ||||| |||||| |||||||| ||||||| |||| |||| ||| ||||| | ||| | ||||||||||||||||    
T  11084477 aagtgtgtttttatacattttcttcctattataccctcattttaatctaccaatatattcatattattttgcacacactttctctttccaataaatttaa 11084378  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    |||||||| ||| ||| |||||||||| |||| |||||  || ||||||||||||||||||||    
T  11084377 tatgttatctttctctcgtaacaaacatttgttaattaatatttttttctccaacaaattcct 11084315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 3309450 - 3309583
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||  ||||| |||||| ||||||| || ||||||||||||| ||||| ||||| ||||||||||| |||| |||||||||    
T  3309450 gtgtatttttgcacattttcttcctattataccctcattttaattcatcaataaattcctacttttt-gcacacattttatattttcaatcaatttaata 3309548  T
Q  285 tgttatatttatctagtaacaaacaattgtcaatt 319  Q
    |||||| ||| |||  |||||||||||||||||||    
T  3309549 tgttatctttctctcttaacaaacaattgtcaatt 3309583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 29408372 - 29408504
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||| ||||| |||||| |||||||||||||| |||||| ||||||||  || | | ||||| ||| ||||||||||||||    
T  29408372 gtgtatttttgcacattttctttctattataccctcattttaatccaccaacaaattcttatttttt--catacactttatcttttcaataaatttaata 29408469  T
Q  285 tgttatatttatctagtaacaaacaattgtcaatt 319  Q
    |||||| ||| |||  |||||||||||||||||||    
T  29408470 tgttatctttctctcataacaaacaattgtcaatt 29408504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 16806142 - 16806224
Alignment:
Q  261 tttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    ||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||| ||||||||||| |||||||||    
T  16806142 tttatctttccaataaatttaatatgttatctttctctcgtaacaaacaattgtcagttattatctttttctctaacaaattc 16806224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 16845423 - 16845505
Alignment:
Q  261 tttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    ||||| |||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||| ||||||||||| |||||||||    
T  16845423 tttatctttccaataaatttaatatgttatctttctctcgtaacaaacaattgtcagttattatctttttctctaacaaattc 16845505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 205 - 319
Target Start/End: Complemental strand, 21253140 - 21253025
Alignment:
Q  205 tttttattacaccctcgttttaatccaccaataaat-tcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaa 303  Q
    ||||||||| ||| || ||||||||||||||||||| |  | |||||| ||||| | ||||| ||| |||||||||||||||||||| ||| ||||||||    
T  21253140 tttttattataccttcattttaatccaccaataaatattttttttttttgcacacactttatcttttcaataaatttaatatgttatttttctctagtaa 21253041  T
Q  304 caaacaattgtcaatt 319  Q
    ||||||||||| ||||    
T  21253040 caaacaattgttaatt 21253025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 209 - 345
Target Start/End: Original strand, 25713876 - 25714013
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctatttttta-gcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaa 307  Q
    ||||| |||||| |||||||||||||||| |||||| ||||||  ||||| | ||| | |||||||||||||||||||||||| ||| ||| ||||||||    
T  25713876 tattataccctcattttaatccaccaatatattccttttttttttgcacacactttctctttccaataaatttaatatgttatctttctctcgtaacaaa 25713975  T
Q  308 caattgtcaattatcatctttttctccaacaaattcct 345  Q
    || |||| | | |   | ||||||||||||||||||||    
T  25713976 catttgttagtcagtgtgtttttctccaacaaattcct 25714013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 45272930 - 45273002
Alignment:
Q  275 aaatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||||||||||||||||| ||| ||||||| ||||||||| |||| ||||||||||||| |||||||||||    
T  45272930 aaatttaatatgttatatttctctcgtaacaagcaattgtcagttattatctttttctccatcaaattcctat 45273002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 44898762 - 44898600
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||| |||||||||  ||| ||||| |||||| ||||||||||||||||||||| ||||||||  |  | | |||   |||  |||||||||||    
T  44898762 aagtgtatttctacacattttatttctattataccctcattttaatccaccaataaattcttattttttttcttacactttccctttttaataaatttaa 44898663  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcct 345  Q
    ||| |||| ||| ||| ||||||||||||||| | |||   ||| |||||||| |||||||||    
T  44898662 tatattatttttctctcgtaacaaacaattgttagttactttctctttctccaccaaattcct 44898600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 27747040 - 27746964
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    ||||| |||||| ||||||||||| ||||| |||||||||||| ||||| | ||||| |||||||||||||||||||    
T  27747040 tattataccctcattttaatccactaataatttcctatttttttgcacacactttatttttccaataaatttaatat 27746964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 34424417 - 34424521
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    ||||||||||||||||| ||  ||| ||||| |||||  |||||||||||  |||| ||||||||| || ||||| | ||||| ||||||||||||||||    
T  34424417 aagtgtatttttacacactttttttctattatacccttattttaatccactgataatttcctatttctttgcacacactttatctttccaataaatttaa 34424516  T
Q  283 tatgt 287  Q
    |||||    
T  34424517 tatgt 34424521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 312
Target Start/End: Complemental strand, 1398058 - 1397936
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    |||||||||| ||||||| |||   |||| |||||| ||||||||||||||||||||||||| |     |||| | ||||| ||||||||||||||||||    
T  1398058 gtgtatttttgcacattttcttccaattataccctcattttaatccaccaataaattcctatct-----cacacactttatctttccaataaatttaata 1397964  T
Q  285 tgttatatttatctagtaacaaacaatt 312  Q
    |||||| ||| ||  |||||||| ||||    
T  1397963 tgttatgtttctcccgtaacaaaaaatt 1397936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 4700744 - 4700864
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattat 321  Q
    |||||||||||||||| |||| ||||||||  |||| | ||| | ||| |||||| ||||||||||||| ||| | | |||||||| |||||| | |||     
T  4700744 ttttaatccaccaatatattcatatttttttacacacactttctctttacaataa-tttaatatgttatctttctttcgtaacaaataattgttagttag 4700842  T
Q  322 catctttttctccaacaaattc 343  Q
     |||||||||||||||||||||    
T  4700843 tatctttttctccaacaaattc 4700864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 20170953 - 20171021
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctatttttt 251  Q
    |||||||||||| ||||||| |||  ||||| |||||| |||||||||||||||| |||||||||||||    
T  20170953 aagtgtatttttgcacattttcttcctattataccctcattttaatccaccaatatattcctatttttt 20171021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 41541757 - 41541621
Alignment:
Q  178 taactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaa 277  Q
    |||| ||||||| |||| || |||| |||  ||||| |||||  |||||||||||||||| |||| |||| |||  |||| | ||| | |||||||||||    
T  41541757 taacaaagtgtacttttgcatattttcttcctattatacccttattttaatccaccaatatattcttattctttttcacacactttctctttccaataaa 41541658  T
Q  278 tttaatatgttatatttatctagtaacaaacaattgt 314  Q
    ||||||||||||| ||| ||  |||||||||| ||||    
T  41541657 tttaatatgttatttttctcctgtaacaaacatttgt 41541621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 4959044 - 4959122
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| |||||| ||||||||||| ||||| ||||| |||||| ||||| | ||||| |||||| ||||||||||||||    
T  4959044 tattataccctcattttaatccactaataatttcctttttttttgcacacactttatctttccattaaatttaatatgt 4959122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 314
Target Start/End: Complemental strand, 13588594 - 13588490
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaac 308  Q
    ||||| |||||||||| ||||||||||||||||  |||||||| ||| ||| ||| | |||| |||||||||||| |||||| ||  |||  ||||||||    
T  13588594 tattataccctcgttt-aatccaccaataaatttttatttttttgcataaaatttctctttcaaataaatttaatgtgttattttcctctcataacaaac 13588496  T
Q  309 aattgt 314  Q
    ||||||    
T  13588495 aattgt 13588490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 347
Target Start/End: Original strand, 42871943 - 42872103
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| || |||| |||  ||| | |||||| |||||||||||||||| ||||||||| ||| ||||  | ||| |   || |||||||||||    
T  42871943 aagtgtatttttgcatattttcttcctatcataccctcattttaatccaccaatatattcctattattttgcac--actttctcactctaataaatttaa 42872040  T
Q  283 tatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||||| ||| ||| |||||||||| |||| | |||  || ||||||| ||||||||||||||    
T  42872041 tatgttat-tttctctcgtaacaaacatttgttagttactat-tttttcttcaacaaattcctat 42872103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 350
Target Start/End: Original strand, 149973 - 150047
Alignment:
Q  276 aatttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctatatt 350  Q
    ||||||||||| ||  ||| ||| ||||||||||||||| | |||| ||||||| ||||||||||||| ||||||    
T  149973 aatttaatatgctagctttctcttgtaacaaacaattgttagttattatcttttactccaacaaattcatatatt 150047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 36243579 - 36243659
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttat 290  Q
    ||||| |||||| |||||||| ||||||  ||||||||||||| ||| | | ||| | ||||||||||||||||||||||||    
T  36243579 tattataccctcattttaatcaaccaatgtattcctatttttt-gcatacactttctctttccaataaatttaatatgttat 36243659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 45271904 - 45271979
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    ||||| |||||| ||||||||||||| || |||  |||||||| ||||| | ||||| |||||||||||||||||||    
T  45271904 tattataccctcattttaatccaccattacatttttatttttt-gcacacactttatctttccaataaatttaatat 45271979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 157647 - 157772
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||| ||||||||||||||| |||  ||||| | |||| |||||||||| ||  || ||  |||||||| ||||| | |||  ||||| |||||||||||    
T  157647 aagtatatttttacacattttcttcctattatatcctcattttaatccatcagcaattttttatttttt-gcacacactttccatttctaataaatttaa 157745  T
Q  283 tatgttatatttatctagtaacaaaca 309  Q
    |||||||| ||| | | ||||||||||    
T  157746 tatgttatctttcttttgtaacaaaca 157772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 4135848 - 4135806
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctatttttt 251  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||    
T  4135848 tattataccctcgttttaatccaccaatagattcatatttttt 4135806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 347
Target Start/End: Complemental strand, 4317198 - 4317030
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattc---ctattttttagcacaaattttatatttccaataaatt 279  Q
    ||||||||||||  |||||| |||| ||||| | |||  |||||||||||||||||||||    | |||||| ||||||  ||| | ||| | |||||||    
T  4317198 aagtgtatttttctacattttctttctattatatccttattttaatccaccaataaattcttttttttttttcgcacaagctttcttttttccataaatt 4317099  T
Q  280 taata-tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattcctat 347  Q
    |||||   |||| ||| |||  |||||||||||||| |||||  |||| |||||| ||||||| |||||    
T  4317098 taatacatttatctttctctcataacaaacaattgttaattactatctctttctcaaacaaatacctat 4317030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 7485738 - 7485839
Alignment:
Q  186 tgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    |||||||||| ||||||  ||  ||||| || ||| |||||||| || ||||| |||||||||||| ||| | | ||||| ||| ||||||||||| |||    
T  7485738 tgtatttttagacatttttttcctattatactctcattttaatctactaataatttcctatttttttgcatacactttatctttgcaataaatttagtat 7485837  T
Q  286 gt 287  Q
    ||    
T  7485838 gt 7485839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 37360859 - 37360798
Alignment:
Q  190 tttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctatttttt 251  Q
    |||||||||||||  ||| ||||| |||||||| |||||  | |||||||||||||||||||    
T  37360859 tttttacacattttatttctattataccctcgtgttaatgaaacaataaattcctatttttt 37360798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 29881782 - 29881834
Alignment:
Q  199 atttcctttttattacaccctcgttttaatccaccaataaattcctatttttt 251  Q
    |||| |||||||||| | | |||||||||||||  ||||||||||||||||||    
T  29881782 attttctttttattatatcatcgttttaatccattaataaattcctatttttt 29881834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 294
Target Start/End: Complemental strand, 33660706 - 33660597
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaa 282  Q
    |||||||||||| ||| ||| |||| ||||| || ||| ||||||| |||| ||   |||||||||||| |||||   ||| | |||| |||||||||||    
T  33660706 aagtgtatttttgcaccttttctttgtattatactctcattttaattcacccatg--ttcctatttttttgcacaggctttctctttctaataaatttaa 33660609  T
Q  283 tatgttatattt 294  Q
    ||| ||||||||    
T  33660608 tatattatattt 33660597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1327 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold1327
Description:

Target: scaffold1327; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 185 - 343
Target Start/End: Complemental strand, 1352 - 1195
Alignment:
Q  185 gtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaata 284  Q
    ||||||||||  |||||| |||  |||||  | ||| |||||||| |||||||||||  ||||||||  |||| | ||||| ||| ||||||||||||||    
T  1352 gtgtatttttgtacattttcttcctattatgctctcattttaatc-accaataaatttttattttttgacacacactttatcttttcaataaatttaata 1254  T
Q  285 tgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    |||||| ||| |||  |||||||||||||||| |||| |||||||||||||||||||||    
T  1253 tgttatctttctctcttaacaaacaattgtcacttattatctttttctccaacaaattc 1195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 343
Target Start/End: Original strand, 5637 - 5798
Alignment:
Q  183 aagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattccta-ttttttagcacaaattttatatttccaataaattta 281  Q
    |||||||||||| ||||||| |||   |||| ||| || ||||||| ||| |||| ||||||| |||||| ||||| | ||| | ||| |||||||||||    
T  5637 aagtgtatttttgcacattttcttccaattataccatcattttaattcactaatatattcctaatttttttgcacacactttctcttttcaataaattta 5736  T
Q  282 atatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaacaaattc 343  Q
    ||||||||| ||| ||| |||||||||| |||| | |||  |||||||||||||||||||||    
T  5737 atatgttatttttctcttgtaacaaacatttgttagttactatctttttctccaacaaattc 5798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 345
Target Start/End: Original strand, 4214 - 4350
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaac 308  Q
    ||||| |||||| |||||||||||||||| |||||| |||||| ||||| | ||| | ||||||||||||||||||| |||| ||| ||| |||||||||    
T  4214 tattataccctcattttaatccaccaatatattcctttttttttgcacacactttctctttccaataaatttaatatattatctttctctcgtaacaaac 4313  T
Q  309 aattgtcaattatcatctttttctccaacaaattcct 345  Q
    | |||| | | |   | ||||||||||||||||||||    
T  4314 atttgttagtcaatgtgtttttctccaacaaattcct 4350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0841; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 338
Target Start/End: Original strand, 3865 - 4026
Alignment:
Q  178 taactaagtgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctatttttta-gcacaaattttatatttccaataa 276  Q
    |||| |||||||||||| ||  ||| |||  ||||| |||||| |||||||| | ||||| |||||| ||||||  ||||| | ||| | ||||||||||    
T  3865 taacgaagtgtattttttcagtttttcttcctattataccctcattttaatctaacaatatattccttttttttttgcacacactttctctttccaataa 3964  T
Q  277 atttaatatgttatatttatctagtaacaaacaattgtcaattatcatctttttctccaaca 338  Q
    |||||| ||||||| ||| ||| |||||||||| |||| | ||||  | |||||||||||||    
T  3965 atttaacatgttatttttctctcgtaacaaacatttgttagttattgtgtttttctccaaca 4026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 48529 - 48629
Alignment:
Q  186 tgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatat 285  Q
    |||||||||||||||||  ||| ||||| |||||| ||||||||||  ||||| || ||||||||| ||||| | | ||| ||| |||||||||||||||    
T  48529 tgtatttttacacatttt-tttctattataccctcattttaatccattaataattttctatttttttgcacacactatattttttcaataaatttaatat 48627  T
Q  286 gt 287  Q
    ||    
T  48628 gt 48629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 184639 - 184568
Alignment:
Q  186 tgtatttttacacatttcctttttattacaccctcgttttaatccaccaataaattcctattttttagcaca 257  Q
    ||||||||| |||||||  ||| ||||| |||||| |||||||| |||||||||||| |||||||| |||||    
T  184639 tgtatttttgcacattttttttctattataccctcattttaatctaccaataaattcatatttttttgcaca 184568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 5515 - 5429
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttat 296  Q
    ||||| ||||||||||||||||| ||||||| || |||||||| ||| |  |||| | ||| ||||||||| | ||||||||||||||    
T  5515 tattataccctcgttttaatccatcaataaaatcatatttttt-gcagaggttttctcttttcaataaattaattatgttatatttat 5429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1130 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 784 - 707
Alignment:
Q  209 tattacaccctcgttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    ||||| ||||||  ||||||| || ||||| ||||| |||||| ||| | ||||||| |||||||||||||||||||||    
T  784 tattataccctcaatttaatctactaataatttcctttttttt-gcaaacattttatctttccaataaatttaatatgt 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0637 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0637
Description:

Target: scaffold0637; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 343
Target Start/End: Complemental strand, 3892 - 3773
Alignment:
Q  222 ttttaatccaccaataaattcctattttttagcacaaattttatatttccaataaatttaatatgttatatttatctagtaacaaacaattgtcaattat 321  Q
    |||||||||||||||||| || | ||||||  |||| | ||| | ||||| |||||||||||||||||| ||| |||  ||||||| || | | | ||||    
T  3892 ttttaatccaccaataaaatcttttttttt--cacacactttctctttccgataaatttaatatgttatctttgtctcataacaaataaattttagttat 3795  T
Q  322 catctttttctccaacaaattc 343  Q
     |||| |||||| |||||||||    
T  3794 tatctctttctctaacaaattc 3773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 46019 - 46060
Alignment:
Q  246 ttttttagcacaaattttatatttccaataaatttaatatgt 287  Q
    |||||| ||||| ||||||| |||||||||||||||||||||    
T  46019 tttttttgcacacattttatctttccaataaatttaatatgt 46060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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