View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_15 (Length: 347)
Name: NF14885_low_15
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 6457287 - 6457611
Alignment:
| Q |
16 |
atttacaagccaataacttttaattgaaacatatttatatcattacctcttcaactgtgatatcaccaaggttagtcgctaagtgttcttttgttattgt |
115 |
Q |
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| T |
6457287 |
atttacaagccaataacttttaattgaaacatatttatatcattacctcttcaactgtgatatcaccaaggttagtcgctaagtgttcttttgttattgt |
6457386 |
T |
|
| Q |
116 |
actgttttgatcaccatagacagtggtatctagtgtgctttttggtggaaacttctggtatatcaaagaataattgcatagaaatatataagcattgagc |
215 |
Q |
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| T |
6457387 |
actgttttgatcaccatagacagtggtatctagtgtgctttttggtggaaactcctggtatatcaaagaataattgcatagaaatatataagcattgagc |
6457486 |
T |
|
| Q |
216 |
tattgacaacaaaatacatattttagctaatatatgttaataatacatttggtacatacttgaagaaggcgaatcacattaggatttacaccagcaacca |
315 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6457487 |
tattgacaacaaaatacatattttagctaatatatattaagaatacatttggtacatacttgaagaaggcgaatcacattaggatttacaccagcaacca |
6457586 |
T |
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| Q |
316 |
tctctcttctaaattcttcatctgt |
340 |
Q |
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| T |
6457587 |
tctctcttccaaattcttcatctgt |
6457611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 6451103 - 6451419
Alignment:
| Q |
16 |
atttacaagccaataacttttaattgaaacatatttatatcattacctcttcaactgtgatatcaccaaggttagtcgctaagtgttcttttgttattgt |
115 |
Q |
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| T |
6451103 |
atttacaagccaatgagtttga-ttgaaacatgttcatatcattacctcttctactgtgatatcaccaagattagtctctaagtgttcttttgttattgt |
6451201 |
T |
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| Q |
116 |
actgttttgatcaccatagacagtggtatctagtgtgctttttggtggaaacttctggtatatcaaagaataat---tgcatagaaatatataagcattg |
212 |
Q |
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| T |
6451202 |
gctattttgatcaccatagacagtggcatctagtgtgctttttggtgggaactcctgttatatcagaaaataatttatacaaagaaatatgtgaatattt |
6451301 |
T |
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| Q |
213 |
agctattgacaacaaaatacatattttagctaatatatgttaataatacatttggtacatacttgaagaaggcgaatcacattaggatttacaccagcaa |
312 |
Q |
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| T |
6451302 |
gaatattgataacaaaatacatattttagcagatat-------taatacaattggtacttacttgaagaagacgaatcacattaggatttacaccagcaa |
6451394 |
T |
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| Q |
313 |
ccatctctcttctaaattcttcatc |
337 |
Q |
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| T |
6451395 |
gcatctctcttccaaattcttcatc |
6451419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 6275041 - 6275078
Alignment:
| Q |
297 |
ggatttacaccagcaaccatctctcttctaaattcttc |
334 |
Q |
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| T |
6275041 |
ggatttacaccagcaatcatctctcttgtaaattcttc |
6275078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 6289528 - 6289568
Alignment:
| Q |
297 |
ggatttacaccagcaaccatctctcttctaaattcttcatc |
337 |
Q |
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| T |
6289528 |
ggattcacaccagcaatcatctctcttgtaaattcttcatc |
6289568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 272 - 337
Target Start/End: Complemental strand, 9604164 - 9604099
Alignment:
| Q |
272 |
tacttgaagaaggcgaatcacattaggatttacaccagcaaccatctctcttctaaattcttcatc |
337 |
Q |
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| T |
9604164 |
tacttgtagaaggcgaatcacacaagggtttactccagcaaccatctctcttccaaattcttcatc |
9604099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 36744906 - 36744835
Alignment:
| Q |
96 |
aagtgttcttttgttattgtactgttttgatcaccatagacagtggtatctagtgtgctttttggtggaaac |
167 |
Q |
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| T |
36744906 |
aagtgttcttttgttattgtactagtttgatctccatagacattgggatctagcttgctttcgggtggaaac |
36744835 |
T |
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