View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_16 (Length: 346)
Name: NF14885_low_16
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_16 |
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| [»] scaffold0411 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 50805411 - 50805095
Alignment:
| Q |
16 |
tcaccgcccagccaaacatattgagaacttcatttaagaagcaaaaacgnnnnnnnattgtttgcaaattagccatgttacttaagatagcatacccatg |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805411 |
tcaccgcccagccaaacatattgagaacttcatttaagaagcaaaaacgtttttttattgtttgcaaattagccatgttacttaagatagcatacccatg |
50805312 |
T |
|
| Q |
116 |
aaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805311 |
aaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatga |
50805212 |
T |
|
| Q |
216 |
agcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805211 |
agcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtaa |
50805112 |
T |
|
| Q |
316 |
cctttacgggttcatat |
332 |
Q |
| |
|
||||||||||||||||| |
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| T |
50805111 |
cctttacgggttcatat |
50805095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 50870466 - 50870782
Alignment:
| Q |
16 |
tcaccgcccagccaaacatattgagaacttcatttaagaagcaaaaacgnnnnnnnattgtttgcaaattagccatgttacttaagatagcatacccatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870466 |
tcaccgcccagccaaacatattgagaacttcatttaagaagcaaaaacgtttttttattgtttgcaaattagccatgttacttaagatagcatacccatg |
50870565 |
T |
|
| Q |
116 |
aaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50870566 |
aaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatga |
50870665 |
T |
|
| Q |
216 |
agcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggtaa |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870666 |
agcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggtaa |
50870765 |
T |
|
| Q |
316 |
cctttacgggttcatat |
332 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
50870766 |
cctttacgggttcatat |
50870782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 19056776 - 19057093
Alignment:
| Q |
16 |
tcaccgcccagccaaacatattgagaacttcatttaagaagcaaaaacgnnnnnnnattgtttgcaaattagccatgttacttaagatagcatacccatg |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19056776 |
tcaccgcccaaccaaacatattgagaacttcatttaagaagcaaaaacgtttttttattgtttgcaaattagccatgttacttaagatagcttacccatg |
19056875 |
T |
|
| Q |
116 |
aaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19056876 |
aaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacgacaagcttttataccagagcaaataaatga |
19056975 |
T |
|
| Q |
216 |
agcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgag-nnnnnnnccaaaagtagaatacgacgggcaacggttctcttacaaggta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19056976 |
agcatgctatgttgatatgaggctaacaaagatgtttttgagagtctgagaaaaaaaaccaaaagtagaatacgacgggcaacggttctcttacaaggta |
19057075 |
T |
|
| Q |
315 |
acctttacgggttcatat |
332 |
Q |
| |
|
||||||||||||||||| |
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| T |
19057076 |
tcctttacgggttcatat |
19057093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 86 - 332
Target Start/End: Original strand, 40705465 - 40705712
Alignment:
| Q |
86 |
agccatgttacttaagatagcatacccatgaaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacg |
185 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40705465 |
agccatgttacttaagatagcttagcaatgaaagtccacaattaggaattgatccatcaaaaccatattgatttggtgttttggtttgctgatagacacg |
40705564 |
T |
|
| Q |
186 |
acaagcttttataccagagcaaataaatgaagcatgctatgttgatatga-ggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaa |
284 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |
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| T |
40705565 |
acaagcttttacaccagagcaaataaatgaagcatgctatgttgatatgagggctaacaaagatgtttttgagagtctaaggaaaaatccaaaagtagaa |
40705664 |
T |
|
| Q |
285 |
tacgacgggcaacggttctcttacaaggtaacctttacgggttcatat |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40705665 |
tacgacgggcaacggttctcttacaaggtaacttttacgggttcatat |
40705712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 40705116 - 40705156
Alignment:
| Q |
19 |
ccgcccagccaaacatattgagaacttcatttaagaagcaa |
59 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
40705116 |
ccgcccatccaaacatattgagaacttaatttaagaagcaa |
40705156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 86 - 332
Target Start/End: Complemental strand, 11494 - 11247
Alignment:
| Q |
86 |
agccatgttacttaagatagcatacccatgaaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttggtttgctgatagacacg |
185 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11494 |
agccatgttacttaagatagcttaccaatgaaagtccacaattaggaattgattcgtcaaaaccatattgatttggtgttttgatttgctgatagacacg |
11395 |
T |
|
| Q |
186 |
acaagcttttataccagagcaaataaatgaagcatgctatgttgatatga-ggctaacaaagatgtttttgagagtctgagnnnnnnnccaaaagtagaa |
284 |
Q |
| |
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||||||||||| || | | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11394 |
acaagcttttacacaaaaccaaataaatgaagcatgctatgttgatctgagggctaacaaagatgtttttgagagtctgaggaaaaacccaaaagtagag |
11295 |
T |
|
| Q |
285 |
tacgacgggcaacggttctcttacaaggtaacctttacgggttcatat |
332 |
Q |
| |
|
|||||| || ||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
11294 |
tacgacaggaaacagtactcttacaaggtaacctttacgggttcatat |
11247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 11846 - 11778
Alignment:
| Q |
18 |
accgcccagccaaacatattgagaacttcatttaagaagcaaaaacgnnnnnnnattgtttgcaaatta |
86 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
11846 |
accgcccaatcaaacatattgagaacttaatttaagaagcaaaaacgcttttttattgtttgcaaatta |
11778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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