View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_18 (Length: 320)
Name: NF14885_low_18
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 1669726 - 1670020
Alignment:
| Q |
19 |
aggtaatacacatggaaccacaaatctcaataaacactataagaaatgcccaaagaatccaaacagggtaattgacagggcacaaaaaacccttgtactt |
118 |
Q |
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| T |
1669726 |
aggtaatacacatggaaccacaaatctcaataaacactataagaaatgccccaagaatccaaacagggtaattgacaaggcacaaaaaacccttgtactt |
1669825 |
T |
|
| Q |
119 |
gggaagcacgtagagggtgatagtaatgtttcttttaagcttgttgaatttaatcaattagagtgtagaatggagcttgccaagatgattatcattgatg |
218 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1669826 |
gggaagcaagtagagggtgatagtaatgtctcttttaagcttgttgaatttaatcaattagagtgtagaatggagcttgctaagatgattatcattgatg |
1669925 |
T |
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| Q |
219 |
aacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttgaaaattcctagtcgtgtctctgctgct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
1669926 |
aacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttgaaaattcctagtcgtgtcactgttgct |
1670020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 44272753 - 44272459
Alignment:
| Q |
19 |
aggtaatacacatggaaccacaaatctcaataaacactataagaaatgcccaaagaatccaaacagggtaattgacagggcacaaaaaacccttgtactt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44272753 |
aggtaatacacatggaaccacaaatctcaataaacactataagaaatgccccaagaatccaaacagggtaattgacaaggcacaaaaaacccttgtactt |
44272654 |
T |
|
| Q |
119 |
gggaagcacgtagagggtgatagtaatgtttcttttaagcttgttgaatttaatcaattagagtgtagaatggagcttgccaagatgattatcattgatg |
218 |
Q |
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| T |
44272653 |
gggaagcaagtagagggtgatagtaatgtctcttttaagcttgttgaatttaatcaattagagtgtagaatggagcttgctaagatgattatcattgatg |
44272554 |
T |
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| Q |
219 |
aacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttgaaaattcctagtcgtgtctctgctgct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
44272553 |
aacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttgaaaattcctagtcgtgtcactgttgct |
44272459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 313
Target Start/End: Complemental strand, 26073977 - 26073682
Alignment:
| Q |
19 |
aggtaatacacatggaaccacaaatctcaataaacactataagaaatgcccaaagaatccaaacagggtaattgacagggcacaaaaaa-cccttgtact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
26073977 |
aggtaatacacatggaaccacaaatctcaataaacactataagaaatgccccaagaatccaaacagggtaattgacaaggcacaaaaaaacccttgtact |
26073878 |
T |
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| Q |
118 |
tgggaagcacgtagagggtgatagtaatgtttcttttaagcttgttgaatttaatcaattagagtgtagaatggagcttgccaagatgattatcattgat |
217 |
Q |
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||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26073877 |
tgggaagcaagtagagggtgatagtaatgtctcttttaaacttgttgaatttaatcaattagagtgtagaatggagcttgctaagatgattatcattgat |
26073778 |
T |
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| Q |
218 |
gaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttgaaaattcctagtcgtgtctctgctgct |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
26073777 |
gaacttccctttaaacatgttgaaggtgttggatttaaaggttttatgagtcgtgctcaacctcgtttgaaaattcctagtcgtgtcactgttgct |
26073682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 241
Target Start/End: Original strand, 20483728 - 20483785
Alignment:
| Q |
184 |
tagaatggagcttgccaagatgattatcattgatgaacttccctttaaacatgttgaa |
241 |
Q |
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|||| |||| ||||| || |||||||| |||||||| ||||| ||||||||||||||| |
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| T |
20483728 |
tagattggaacttgcaaaaatgattattattgatgagcttccttttaaacatgttgaa |
20483785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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