View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_20 (Length: 287)
Name: NF14885_low_20
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 39933634 - 39933381
Alignment:
| Q |
16 |
ataaaagacaaattgttttcccacccccgaataaaatnnnnnnntcaaaagtaaattttacaactgtttcaattcaattgatcagaatagtgaagtgttg |
115 |
Q |
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| T |
39933634 |
ataaaagacaaattgttttcccacccccgaataaaataaaaaaatcaaaagtaaattttacaactgtttcaattcaattgatcagaatagtgaagtgttg |
39933535 |
T |
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| Q |
116 |
gtaacaacagaaactatacataaacgatgaacaatactcattcgcaatattcgatcaaatcaaacaccatgaacaacaataacaacaacaaacccaaacc |
215 |
Q |
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| T |
39933534 |
gtaacaacagaaactatacataaaagatgaacaatactcattcgcaatattcgatcaaatcaaacaccatgaacaacaataacaacaacaaacccaaacc |
39933435 |
T |
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| Q |
216 |
tcctttcatgccagcaaaggatgacaccaaacctgttcttcaagacccagtact |
269 |
Q |
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| T |
39933434 |
tcctttcatgccagcaaaggatgacaccaaacctgttcttcaagacccagtact |
39933381 |
T |
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Back To:
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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 3228944 - 3229010
Alignment:
| Q |
196 |
aacaacaacaaacccaaacctcctttcatgccagcaaaggatgacaccaaacctgttcttcaagacc |
262 |
Q |
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| T |
3228944 |
aacaataacaaacccaaacctgctttcatgccagcaaaggatgataccaaacctgttcttcaagacc |
3229010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 3228059 - 3228106
Alignment:
| Q |
218 |
ctttcatgccagcaaaggatgacaccaaacctgttcttcaagacccagt |
266 |
Q |
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||||||| |||||||||||||| ||||||||||||||| |||||||||| |
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| T |
3228059 |
ctttcataccagcaaaggatgataccaaacctgttctt-aagacccagt |
3228106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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