View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14885_low_23 (Length: 251)
Name: NF14885_low_23
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_23 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 32095773 - 32096023
Alignment:
| Q |
1 |
taaacaaagattcaaatccatgagatggggcacatggtgatccaacaccgtaattctataaatatattagctctttaactaatacaggcttgatacaatg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095773 |
taaacaaaaattcaaatccatgagatggggcacatggtgatccaacaccgtaattctataaatatattagctctttaactaatacaggcttgatacaatg |
32095872 |
T |
|
| Q |
101 |
gccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaaccaagaccaagcattggatat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095873 |
accaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaaccaagaccaagcattggatat |
32095972 |
T |
|
| Q |
201 |
aaaatgaaattcctaactaactaccatgaatagctaaatacgaagtataat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32095973 |
aaaatgaaattcctaactaactaccatgaatagctaaatacgaagtataat |
32096023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 32091741 - 32091934
Alignment:
| Q |
54 |
ttctataaatatattagctctttaactaatacaggcttgatacaatggccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattgg |
153 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
32091741 |
ttctataattatattagctctttaacaaatacaggcttgatacattgaccaagatacgaccgactaccaccaaatagttgcaataataaatcaacattgg |
32091840 |
T |
|
| Q |
154 |
agtaactaattatacagtaatcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaagta |
247 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
32091841 |
agtaactaattatgcagtaatcttaaccaagaccaagcattggttataaaatgaatttcctaactaaccaccatgaatagctaaatactaagta |
32091934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 29887882 - 29887809
Alignment:
| Q |
174 |
tcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccatgaatagctaaatacgaagta |
247 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||||||||| |||| ||||||||||||||||||| ||||| |
|
|
| T |
29887882 |
tcttaaccaataccaagcattagatatattatgaaattcctatgtaaccaccatgaatagctaaatacaaagta |
29887809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 32091647 - 32091717
Alignment:
| Q |
1 |
taaacaaagattcaaatccatgagatggggcaca-------tggtgatccaacaccgtaattctataaata |
64 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32091647 |
taaacaaaaattcaaatccatgagatagggcacatgccacatggtgatccaacaccgtaattctataaata |
32091717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 29427872 - 29427907
Alignment:
| Q |
35 |
tggtgatccaacaccgtaattctataaatatattag |
70 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29427872 |
tggtgatccaacaccgtaattctattaatatattag |
29427907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 29428029 - 29428098
Alignment:
| Q |
158 |
actaattatacagtaatcttaaccaagaccaagcattggatataaaatgaaattcctaactaactaccat |
227 |
Q |
| |
|
||||||| ||||| ||||||||| || | ||||||||| ||||| ||||| |||||||||||| ||||| |
|
|
| T |
29428029 |
actaattttacagcaatcttaacaaataacaagcattgaatatattatgaatttcctaactaacaaccat |
29428098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 41746642 - 41746516
Alignment:
| Q |
118 |
taccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaaccaagaccaagcat---tggatataaaatgaaattcct |
214 |
Q |
| |
|
||||||||| |||| || ||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||| |||||||| ||||||| ||| |
|
|
| T |
41746642 |
taccaccaagtagttgcagtaataaatcaacattggagtaactaattatacaataatcttaacctaaaccaagcataactggatatattatgaaatacct |
41746543 |
T |
|
| Q |
215 |
aactaactaccatgaatagctaaatac |
241 |
Q |
| |
|
|| |||| |||| |||||||||||| |
|
|
| T |
41746542 |
aagtaaccaccacatatagctaaatac |
41746516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University