View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_3 (Length: 525)
Name: NF14885_low_3
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_3 |
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| [»] scaffold0265 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 20041852 - 20041348
Alignment:
| Q |
1 |
acctatggaagacccgttgatatggtcttcaacccattaggggtaccctcgcgaatgaatgtaggacagatattggaatgttgaggcatcacaaaacacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20041852 |
acctatggaagacccgttgatatggtcttcaacccattaggggtaccctcacggatgaatgtaggacagatattggaatgttgaggcatcacaaaacacc |
20041753 |
T |
|
| Q |
101 |
aactaagagttagaaggttacaatacggctgatatgaaaggttgaactcacctcatcttcatcagaagattcgtcagattctaagtcagaactatcagcc |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20041752 |
aactaagagttagaaggttacaatatggctgatatgaaaggttgaactcacctcatcttcatcagaagattcgtcagattctaagtcagaactatcagcc |
20041653 |
T |
|
| Q |
201 |
ttctttgcgggtgcactccctattttggaaggaacaacctctgcagcaggtttctaaaccatgaaacaaaaaagtttaattaaaaagggaattttataaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20041652 |
ttctttgcgggtgcactccctattttggaaggaacaacctctgcagcaggtttctaaaccatgaaacaaaaaagtttaattaaaaagggaattttataaa |
20041553 |
T |
|
| Q |
301 |
accggtaaatgcaatgatataaaattaaggacactatcaccatgcgataaacttcaaaatatctaatacctcatcttcatcagaagattcttcagaagat |
400 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20041552 |
accggtaaatggaatgatataaaattaaggacactatcaccatgcaataaacttcaaaatatctaatacctcatcttcatcaaaagattcttcagaagat |
20041453 |
T |
|
| Q |
401 |
gaataataaggatcagctttctttacaggtgcacttccatttttagatggaacaacttttgttgcagggttctaaaccatgacacaaaaatgtttaatta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20041452 |
gaataataaggatcagctttctttacaggtgcacttccatttttagatggaacaacttttgttgcagggttctaaaccatgacacaaaaatgtttaatta |
20041353 |
T |
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| Q |
501 |
aaacg |
505 |
Q |
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||||| |
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| T |
20041352 |
aaacg |
20041348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 18153379 - 18153302
Alignment:
| Q |
5 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctcgcgaatgaatgtaggacagatattggaatgtt |
82 |
Q |
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| T |
18153379 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctcacgaatgaatgtaggacagatattggaatgtt |
18153302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 459
Target Start/End: Original strand, 28565641 - 28565768
Alignment:
| Q |
335 |
tatcaccatgcgataaacttcaaaatatctaatacctcatcttcatcagaagattcttcagaa---gatgaataataaggatcagctttctttacaggtg |
431 |
Q |
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||||| ||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||| | | | ||| |||| |||||||| |||||| |
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| T |
28565641 |
tatcatcatgcaataaacttcaaaatgtctattaccttgtcttcatcagaagattcttcagaatcttcttcttcagaagtatcaactttctttgcaggtg |
28565740 |
T |
|
| Q |
432 |
cacttccatttttagatggaacaacttt |
459 |
Q |
| |
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|||| |||||||||||||||||| |||| |
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| T |
28565741 |
cactcccatttttagatggaacagcttt |
28565768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 369 - 480
Target Start/End: Original strand, 28565417 - 28565528
Alignment:
| Q |
369 |
cctcatcttcatcagaagattcttcagaagatgaataataaggatcagctttctttacaggtgcacttccatttttagatggaacaacttttgttgcagg |
468 |
Q |
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|||||||||||||||||||||| |||| | | | || || | ||||||||||| | |||||||| |||||||||||||||||| |||| | |||||| |
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| T |
28565417 |
cctcatcttcatcagaagattcatcagtatcttcttcatcagaagcagctttctttgcgggtgcactcccatttttagatggaacagctttagctgcagg |
28565516 |
T |
|
| Q |
469 |
gttctaaaccat |
480 |
Q |
| |
|
|||| |||||| |
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|
| T |
28565517 |
tttctgaaccat |
28565528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 266
Target Start/End: Original strand, 28565222 - 28565295
Alignment:
| Q |
193 |
tatcagccttctttgcgggtgcactccctattttggaaggaacaacctctgcagcaggtttctaaaccatgaaa |
266 |
Q |
| |
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||||||| |||||||||||| ||||||| | |||||||||||| | | |||||||||||||| ||| |||||| |
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| T |
28565222 |
tatcagctttctttgcgggtacactcccattcttggaaggaacagcttttgcagcaggtttctgaacaatgaaa |
28565295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 31396940 - 31396863
Alignment:
| Q |
5 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctcgcgaatgaatgtaggacagatattggaatgtt |
82 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| |
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|
| T |
31396940 |
atggaagaaccattgatatggtcttcaacccattaggggtaccctcgcaaatgaatgtaggacaaatattgcaatgtt |
31396863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 6606 - 6561
Alignment:
| Q |
5 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctc |
50 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6606 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctc |
6561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 21826178 - 21826223
Alignment:
| Q |
5 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctc |
50 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21826178 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctc |
21826223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 222329 - 222398
Alignment:
| Q |
5 |
atggaagacccgttgatatggtcttcaacccattaggggtaccctcgcgaatgaatgtaggacagatatt |
74 |
Q |
| |
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|||||| ||||||||||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||| |
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| T |
222329 |
atggaacacccgttgatatggtcttcaatcccttaggagtaccctcccgaatgaatgtgggacaaatatt |
222398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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