View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_31 (Length: 210)
Name: NF14885_low_31
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 15502830 - 15502737
Alignment:
| Q |
105 |
aagaactaccactaccagctttcttatgttatttatttcctttttaaattatataaaaggtctcatcgtcttgctttcttattgatgatgaaag |
198 |
Q |
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| T |
15502830 |
aagaactaccactaccagctttcttatgttatttatttcctttttaaattatataaaaggtctcatcttcttgctttcttattgatgatgaaag |
15502737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 3123128 - 3123208
Alignment:
| Q |
22 |
tgaagaaggaaaacgtgtaggttgaaattgaaggtgatagggttcttcagagaagcggagagaggaatgttgagaaagaag |
102 |
Q |
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| T |
3123128 |
tgaagaaggaagaggtgaaggttgaaattgaagatgataaggttcttcagataagcggagaaaggaccgttgagaaagaag |
3123208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 35097721 - 35097825
Alignment:
| Q |
6 |
gctgttcttcctggactgaagaaggaaaacgtgtaggttgaaattgaaggtgatagggttcttcagagaagcggagagaggaatgttgagaaagaagcta |
105 |
Q |
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| T |
35097721 |
gctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagata |
35097820 |
T |
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| Q |
106 |
agaac |
110 |
Q |
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| T |
35097821 |
agaac |
35097825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 35098044 - 35098114
Alignment:
| Q |
40 |
aggttgaaattgaaggtgatagggttcttcagagaagcggagagaggaatgttgagaaagaagctaagaac |
110 |
Q |
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| T |
35098044 |
aggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaac |
35098114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 35072961 - 35072858
Alignment:
| Q |
6 |
gctgttcttcctggactgaagaaggaaaacgtgtaggttgaaattgaaggtgatagggttcttcagagaagcggagagaggaatgttgagaaagaagcta |
105 |
Q |
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|||| ||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||| |||||| |||||||| |||| ||||||| || |
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| T |
35072961 |
gctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacattgaaaaagaagata |
35072862 |
T |
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| Q |
106 |
agaa |
109 |
Q |
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|||| |
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| T |
35072861 |
agaa |
35072858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 35106899 - 35107002
Alignment:
| Q |
6 |
gctgttcttcctggactgaagaaggaaaacgtgtaggttgaaattgaaggtgatagggttcttcagagaagcggagagaggaatgttgagaaagaagcta |
105 |
Q |
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|||| ||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||| |||||| |||||||| |||| ||||||| || |
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| T |
35106899 |
gctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaactttgaaaaagaagata |
35106998 |
T |
|
| Q |
106 |
agaa |
109 |
Q |
| |
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|||| |
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| T |
35106999 |
agaa |
35107002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 36296734 - 36296625
Alignment:
| Q |
6 |
gctgttcttcctggactgaagaaggaaaacgtgtaggttgaaattgaaggtgatagggttcttcagagaagcggagagaggaatgttgagaaagaagcta |
105 |
Q |
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|||| |||||||||||||||||||||| | ||| ||||||||||||||| ||| || |||||||||| || ||||||||||| ||||||||||||| | |
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| T |
36296734 |
gctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttcagattagtggagagaggaacgttgagaaagaagaca |
36296635 |
T |
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| Q |
106 |
agaactacca |
115 |
Q |
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||||| |||| |
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| T |
36296634 |
agaacaacca |
36296625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 36961310 - 36961372
Alignment:
| Q |
48 |
attgaaggtgatagggttcttcagagaagcggagagaggaatgttgagaaagaagctaagaac |
110 |
Q |
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||||||| ||||||||||||||||| ||||||||||| | ||||||||||||| ||||||| |
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| T |
36961310 |
attgaagttgatagggttcttcagatcagcggagagagaagcgttgagaaagaagataagaac |
36961372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 24014460 - 24014356
Alignment:
| Q |
6 |
gctgttcttcctggactgaagaaggaaaacgtgtaggttgaaattgaaggtgatagggttcttcagagaagcggagagaggaatgttgagaaagaagcta |
105 |
Q |
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|||| ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
24014460 |
gctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagata |
24014361 |
T |
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| Q |
106 |
agaac |
110 |
Q |
| |
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||||| |
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| T |
24014360 |
agaac |
24014356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 109
Target Start/End: Complemental strand, 24041017 - 24040914
Alignment:
| Q |
6 |
gctgttcttcctggactgaagaaggaaaacgtgtaggttgaaattgaaggtgatagggttcttcagagaagcggagagaggaatgttgagaaagaagcta |
105 |
Q |
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|||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||||||||||||||| |||||| |||||||| ||||| ||||||| || |
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| T |
24041017 |
gctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttcagataagcggtgagaggaacgttgaaaaagaagata |
24040918 |
T |
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| Q |
106 |
agaa |
109 |
Q |
| |
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|||| |
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| T |
24040917 |
agaa |
24040914 |
T |
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