View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_32 (Length: 203)
Name: NF14885_low_32
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 47326916 - 47326812
Alignment:
| Q |
80 |
cacctccttccaaagagcatcttcaccattcaacaacctccacctctacttggctaacaagctcaaattcatcaatctcacatcctttaccccgagacca |
179 |
Q |
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| T |
47326916 |
cacctccttccaaagagcatcttcaccattcaacaacctccacctccacttggctaacaagctcaaattcatcaatctcacatcctttaccccgagacca |
47326817 |
T |
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| Q |
180 |
cccat |
184 |
Q |
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||||| |
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| T |
47326816 |
cccat |
47326812 |
T |
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Target: chr3; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 43074710 - 43074805
Alignment:
| Q |
80 |
cacctccttccaaagagcatcttcaccattcaacaacctccacctctacttggctaacaagctcaaattcatcaatctcacatcctttaccccgag |
175 |
Q |
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| T |
43074710 |
cacctccttccaaagagcctcctcaccattcaacaacctccacctccacttagctaacaaactcaagttcatcaacctcacatccttgaccccgag |
43074805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 13959819 - 13959881
Alignment:
| Q |
110 |
caacaacctccacctctacttggctaacaagctcaaattcatcaatctcacatcctttacccc |
172 |
Q |
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| T |
13959819 |
caacaacctccacctccacttggctaacaaactaacattcatcaaacacacatccttcacccc |
13959881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 10429588 - 10429543
Alignment:
| Q |
80 |
cacctccttccaaagagcatcttcaccattcaacaacctccacctc |
125 |
Q |
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| T |
10429588 |
cacctccttccaaagagcctcctcaccattcaacaacttccacctc |
10429543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 46614916 - 46614989
Alignment:
| Q |
81 |
acctccttccaaagagcatcttcaccattcaacaacctccacctctacttggctaacaagctcaaattcatcaa |
154 |
Q |
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|||||||||||||||| | ||| ||||||||||| |||| |||| |||| | ||||||||||||||| ||||| |
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| T |
46614916 |
acctccttccaaagagaactttccccattcaacaatctccccctccacttagttaacaagctcaaatttatcaa |
46614989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 12171597 - 12171515
Alignment:
| Q |
84 |
tccttccaaagagcatcttcaccattcaacaacctccacctctacttggctaacaagctcaaattcatcaatctcacatcctt |
166 |
Q |
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|||||||||||||||| || |||||||||| |||||||||| | ||| ||||||| | ||| |||||| | | ||||||||| |
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| T |
12171597 |
tccttccaaagagcattctcgccattcaacaccctccacctccatttgactaacaaacacaagttcatccaccacacatcctt |
12171515 |
T |
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