View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_4 (Length: 449)
Name: NF14885_low_4
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 84 - 433
Target Start/End: Complemental strand, 8362936 - 8362589
Alignment:
| Q |
84 |
tgtggatttaaaccctaaccaagcttatcaaatgttcaagcaatgttttatcatctgaacaaattctatgaatcaaaatatataggagcggtgcaaaaac |
183 |
Q |
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| T |
8362936 |
tgtggatttaaaccctaaccaagcttat---atgttcaagcaatgttttatcatctgaacaaattctatgaatcaaaatatataggagcggtgcaaaaac |
8362840 |
T |
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| Q |
184 |
atcaaggaaaatggacaacattctgaagataatagagaaa-tgaatctcacactgagatatatttgaacagaagtttgagtgccaatttaaaaaatttga |
282 |
Q |
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| T |
8362839 |
atcaaggaaaatggacaacattctgaagataatagagaaaatgaatctcacactgagatatatttgaacagaagtttgagtgccaatttaaaaaatttga |
8362740 |
T |
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| Q |
283 |
ccaccttttatgtactaagtgtttggtaaatacttcaaaactaccagcataatttttgcannnnnnncattgcccatgttgtctaacgtgataatgaata |
382 |
Q |
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| T |
8362739 |
ccaccttttatgtcctaagtgtttagtaaatacttcaaaactaccagcataatttttgcatttttttcattgcccatgttgtctaacgtgataatgaata |
8362640 |
T |
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| Q |
383 |
tcttgtgtctttatttttgtaatttctttgtagctcttttgtcgtactttg |
433 |
Q |
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| T |
8362639 |
tcttgtgtctttatttttgtaatttctttatagctcttttgtcgtactttg |
8362589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 433
Target Start/End: Complemental strand, 8371926 - 8371867
Alignment:
| Q |
374 |
taatgaatatcttgtgtctttatttttgtaatttctttgtagctcttttgtcgtactttg |
433 |
Q |
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| T |
8371926 |
taataaatatcttgtgtctttctttttgtaatttctatgtagatcttttgttgtactttg |
8371867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 8370512 - 8370467
Alignment:
| Q |
388 |
tgtctttatttttgtaatttctttgtagctcttttgtcgtactttg |
433 |
Q |
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| T |
8370512 |
tgtctttatttttgtaatttctttgtagatcttttgttgtactttg |
8370467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 316
Target Start/End: Complemental strand, 8370726 - 8370587
Alignment:
| Q |
179 |
aaaacatcaaggaaaatggacaacattctgaagataatagagaaa-tgaatctcacactgagatatatttgaacagaagtttgagtgccaattt-aaaaa |
276 |
Q |
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| T |
8370726 |
aaaatatcaaggaaaaggaccaacattctgaagattttggagaaaatggacctcaaactgagatatatttgaacaaaagcttaagtgccagtttggaagt |
8370627 |
T |
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| Q |
277 |
atttgaccaccttttatgtactaagtgtttggtaaatact |
316 |
Q |
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| T |
8370626 |
ttttgaccgccttttttgttccaaatgtttggtaaatact |
8370587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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