View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_5 (Length: 434)
Name: NF14885_low_5
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Original strand, 1349672 - 1350075
Alignment:
| Q |
13 |
aatatctacatgaccaccatcacacatttacacatttcttaggaggagataagatttgtggggcaaaatccacatggcactgtcctattggttgataatg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1349672 |
aatatctacatgaccaccatcacacatttacacatttcttaggaggagataagatttgtggggcaaaatccacatggcactgtcctattggtttataatg |
1349771 |
T |
|
| Q |
113 |
ataaggctaacacacaaatttccattcttgtgtggttaatataggttcaatgattatcattttcaaaatctaacaagttggtgttaggcaatagccaatt |
212 |
Q |
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| T |
1349772 |
ataaggctaacacacaaatttccattcttgtgtggttaatataggttcaatgattatcattttcaaaatctaacaagttggtattaggcagtagccaatt |
1349871 |
T |
|
| Q |
213 |
accacaatattaagaccataatattggaaatagaaaaataaaaaccattatatatagcaagttttagtagaagctttgcaattcaagtagaagtgtgttt |
312 |
Q |
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| T |
1349872 |
accacaatattaagaccataatattggaaatagaaaaataaaaaccattatatatagcaagttttagtagaagctttgcaattcaagtagaagtgtgttt |
1349971 |
T |
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| Q |
313 |
tacttgtgaactaagnnnnnnntggcttcctctatgatgtcctcttcagctgtgactacagttaaccgcgtctcttcggtacaatccggcgcggtggctc |
412 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1349972 |
tacttgtgaactaagaaaaaaatggcttcctctatgatgtcctcttcagctgtgactacagttaaccgcgtctcttcggtacaatccggcgcggtagctc |
1350071 |
T |
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| Q |
413 |
catt |
416 |
Q |
| |
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|||| |
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| T |
1350072 |
catt |
1350075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 210 - 416
Target Start/End: Original strand, 1383435 - 1383649
Alignment:
| Q |
210 |
attaccacaatat-taagaccataatattggaaatagaaaaataaaaaccattatatatagcaagttttagtagaagctttgcaattcaagtagaagtgt |
308 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| | ||||||||||||||| |||||| | |
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| T |
1383435 |
attaccacaatttataagaccataatattggaaatagaaaaataaaaac-attatataaagcaagtttgagtataggctttgcaattcaagcagaagtat |
1383533 |
T |
|
| Q |
309 |
gttttacttgtgaactaagnnnnnnn--------tggcttcctctatgatgtcctcttcagctgtgactacagttaaccgcgtctcttcggtacaatccg |
400 |
Q |
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| T |
1383534 |
atcttactagtgaacaaagtaagggagaaaaacatggcttcctctatgatgtcctcttcagctgtgactacagttaaccgtgcctcttcggtacaatccg |
1383633 |
T |
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| Q |
401 |
gcgcggtggctccatt |
416 |
Q |
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| T |
1383634 |
gtgcggtggctccatt |
1383649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 210 - 416
Target Start/End: Original strand, 1389540 - 1389754
Alignment:
| Q |
210 |
attaccacaatat-taagaccataatattggaaatagaaaaataaaaaccattatatatagcaagttttagtagaagctttgcaattcaagtagaagtgt |
308 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| | ||||||||||||||| |||||| | |
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| T |
1389540 |
attaccacaatttataagaccataatattggaaatagaaaaataaaaac-attatataaagcaagtttgagtataggctttgcaattcaagcagaagtat |
1389638 |
T |
|
| Q |
309 |
gttttacttgtgaactaagnnnnnnn--------tggcttcctctatgatgtcctcttcagctgtgactacagttaaccgcgtctcttcggtacaatccg |
400 |
Q |
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| ||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
1389639 |
atcttactagtgaacaaagtaagggagaaaaacatggcttcctctatgatgtcctcttcagctgtgactacagttaaccgtgcctcttcggtacaatccg |
1389738 |
T |
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| Q |
401 |
gcgcggtggctccatt |
416 |
Q |
| |
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| T |
1389739 |
gtgcggtggctccatt |
1389754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 210 - 416
Target Start/End: Original strand, 1373164 - 1373373
Alignment:
| Q |
210 |
attaccacaatat-taagaccataatattggaaatagaaaaataaaaaccattatatatagcaagttttagtagaagctttgcaattcaagtagaagtgt |
308 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||||| |||||| | |||||||| |||||| |||| | | ||||||||||||| |||||| | |
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| T |
1373164 |
attaccacaatttataagaccataatattggaaatagaaaattaaaaat-agtatatatat-aagtttgagtataggttttgcaattcaagcagaagtat |
1373261 |
T |
|
| Q |
309 |
gttttacttgtgaactaagnnnnnnn----tggcttcctctatgatgtcctcttcagctgtgactacagttaaccgcgtctcttcggtacaatccggcgc |
404 |
Q |
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| T |
1373262 |
atcttactagtgaactaagggagaaaaacatggcttcctctatgatgtcctcttcagctgtgactacagttaaccgtgcctcttcggtacaatccggtgc |
1373361 |
T |
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| Q |
405 |
ggtggctccatt |
416 |
Q |
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|||||||||||| |
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| T |
1373362 |
ggtggctccatt |
1373373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 160 - 416
Target Start/End: Original strand, 1357760 - 1358030
Alignment:
| Q |
160 |
caatgattatcattttcaaaatctaacaagttggtgttaggcaatagccaattaccacaatattaaga-ccataatattggaaatagaaaaataaaaacc |
258 |
Q |
| |
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||||| |||||||||||| |||| ||||| | || ||| ||| | ||| |||||||||| || ||| ||||||||||||||||| ||||||||| || |
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| T |
1357760 |
caatgtttatcattttcacaatcaaacaaaattgtattatgcagcaaccagttaccacaatttttagaaccataatattggaaatacaaaaataaagac- |
1357858 |
T |
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| Q |
259 |
attatatatagcaagttttagtagaagctttgcaattcaagtagaagtgtgttttactt-----gtgaactaagnnnnnnn---------tggcttcctc |
344 |
Q |
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|||||||||||||||||| |||| | |||||| |||||||| |||||| | | |||| | |||||||||| |||||||||| |
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| T |
1357859 |
attatatatagcaagtttgagtataggctttgaaattcaagcagaagtatatcttacattactagtgaactaagtaagggagaaaaaaaatggcttcctc |
1357958 |
T |
|
| Q |
345 |
tatgatgtcctcttcagctgtgactacagttaaccgcgtctcttcggtacaatccggcgcggtggctccatt |
416 |
Q |
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| T |
1357959 |
tatgatttcctcttcagctatgactacagttaaccgcgcctcttcggtacaatccggcgcggtggctccatt |
1358030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 1393605 - 1393686
Alignment:
| Q |
335 |
tggcttcctctatgatgtcctcttcagctgtgactacagttaaccgcgtctcttcggtacaatccggcgcggtggctccatt |
416 |
Q |
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|||||||||||||||| |||||||||||| | |||||||||||||| | |||| ||||||||||||| |||||||||||||| |
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| T |
1393605 |
tggcttcctctatgatctcctcttcagctatcactacagttaaccgtgcctctccggtacaatccggtgcggtggctccatt |
1393686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 1373058 - 1373114
Alignment:
| Q |
98 |
tattggttgataatgataaggctaacacacaaatttccattcttgtgtggttaatat |
154 |
Q |
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||||||| | |||||||||||||| |||| |||||||||||| ||||||||| |||| |
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| T |
1373058 |
tattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttgatat |
1373114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 1383336 - 1383392
Alignment:
| Q |
98 |
tattggttgataatgataaggctaacacacaaatttccattcttgtgtggttaatat |
154 |
Q |
| |
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||||||| | |||||||||||||| |||| |||||||||||| ||||||||| |||| |
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|
| T |
1383336 |
tattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttgatat |
1383392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 1389441 - 1389497
Alignment:
| Q |
98 |
tattggttgataatgataaggctaacacacaaatttccattcttgtgtggttaatat |
154 |
Q |
| |
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||||||| | |||||||||||||| |||| |||||||||||| ||||||||| |||| |
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|
| T |
1389441 |
tattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttgatat |
1389497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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