View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_6 (Length: 431)
Name: NF14885_low_6
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 32095755 - 32095452
Alignment:
| Q |
1 |
acttgtgcagactcagatggaaccggtaattcaggactgcagagagatggtgcaccaatttggagatgtaattagaaggtaattcataaagtgaaagacg |
100 |
Q |
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| T |
32095755 |
acttgtgcagactcagatggaaccggtaattcaggactgcagagagatggtgcaccaatttggagatgtaattagaaggtaattcataaagtgaaagacg |
32095656 |
T |
|
| Q |
101 |
aagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgcttaaaaattgagtggagcactaagcattgagtaagacacaag |
200 |
Q |
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| T |
32095655 |
aagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgcttaaaaattgagtggagcactaagcattgagtaagacacaag |
32095556 |
T |
|
| Q |
201 |
ttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacactcttgtatcctttggttctctttatagaaat |
300 |
Q |
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| T |
32095555 |
ttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacactcttgtatcctttggttctctttatagaaat |
32095456 |
T |
|
| Q |
301 |
cttg |
304 |
Q |
| |
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|||| |
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| T |
32095455 |
cttg |
32095452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 60 - 280
Target Start/End: Complemental strand, 32089795 - 32089576
Alignment:
| Q |
60 |
ttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgttttagtgaatatttaatcttgtaacttgct |
159 |
Q |
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| T |
32089795 |
ttggagatgtaattagaaggtaattcatat-gtgaaagatgaagactcttatggatgcgtaagattttgttttagtggatatttaatcttttaacttgct |
32089697 |
T |
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| Q |
160 |
taaaaattgagtggagcactaagcattgagtaagacacaagttgtgagcgaatcagtatgaaaaataggcaaagggactctccagctttagtataaatag |
259 |
Q |
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| T |
32089696 |
taaaaattaactgcagcactaagcatcgagtaagacacaaattgtgagtgaatcattatgaaaaatagggaaagggacactccagctttagtttaaatag |
32089597 |
T |
|
| Q |
260 |
aggatcacactcttgtatcct |
280 |
Q |
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| T |
32089596 |
aggatcacactcttgtatcct |
32089576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 304 - 413
Target Start/End: Complemental strand, 32095428 - 32095319
Alignment:
| Q |
304 |
gttgttaattaatttattctgtctgatgaatatctgaattgcatctttctgttgaattaaagatttctgtgaaatcaaactcactgaccgatcaaatgtg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
32095428 |
gttgttaattaatttattctgtctgatgaatatctgaattgcatctttctgttgaattaaagatttctgtgaaatcaaactcactgaccgaacgaatgtg |
32095329 |
T |
|
| Q |
404 |
tggttacttg |
413 |
Q |
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|||||||||| |
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| T |
32095328 |
tggttacttg |
32095319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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