View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14885_low_7 (Length: 425)

Name: NF14885_low_7
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14885_low_7
NF14885_low_7
[»] chr5 (6 HSPs)
chr5 (19-326)||(40039680-40039988)
chr5 (323-369)||(18489069-18489115)
chr5 (324-369)||(10166479-10166524)
chr5 (324-368)||(15889434-15889478)
chr5 (320-368)||(20206534-20206582)
chr5 (320-348)||(35493987-35494015)
[»] chr1 (8 HSPs)
chr1 (319-368)||(51241508-51241557)
chr1 (324-359)||(19020591-19020626)
chr1 (320-351)||(1864230-1864261)
chr1 (324-369)||(23334611-23334656)
chr1 (320-348)||(13775625-13775653)
chr1 (319-347)||(41142701-41142729)
chr1 (324-368)||(43356458-43356502)
chr1 (324-360)||(45140008-45140044)
[»] chr7 (7 HSPs)
chr7 (320-368)||(2402493-2402541)
chr7 (320-349)||(15913570-15913599)
chr7 (324-368)||(18023702-18023746)
chr7 (327-359)||(22600457-22600489)
chr7 (324-360)||(30857271-30857307)
chr7 (320-368)||(46849101-46849149)
chr7 (324-368)||(47342428-47342472)
[»] chr6 (7 HSPs)
chr6 (320-368)||(29283834-29283882)
chr6 (324-368)||(33542801-33542845)
chr6 (325-360)||(28951423-28951458)
chr6 (320-349)||(331899-331928)
chr6 (324-369)||(12333561-12333606)
chr6 (324-368)||(788889-788933)
chr6 (320-364)||(5954630-5954674)
[»] chr4 (8 HSPs)
chr4 (319-363)||(12712017-12712061)
chr4 (320-368)||(41520973-41521021)
chr4 (320-350)||(38934897-38934927)
chr4 (330-368)||(40160881-40160919)
chr4 (319-360)||(24063210-24063251)
chr4 (324-360)||(10148202-10148238)
chr4 (320-368)||(19997358-19997406)
chr4 (324-368)||(21318247-21318291)
[»] chr3 (11 HSPs)
chr3 (324-368)||(45727512-45727556)
chr3 (324-368)||(48234447-48234491)
chr3 (320-349)||(2078259-2078288)
chr3 (323-364)||(2662114-2662155)
chr3 (319-347)||(8075803-8075831)
chr3 (324-360)||(10594700-10594736)
chr3 (329-365)||(12142001-12142037)
chr3 (324-368)||(14030729-14030773)
chr3 (324-368)||(25955287-25955331)
chr3 (320-368)||(48022308-48022356)
chr3 (324-356)||(52508287-52508319)
[»] chr8 (7 HSPs)
chr8 (322-368)||(3672610-3672656)
chr8 (325-369)||(8694123-8694167)
chr8 (324-352)||(15079162-15079190)
chr8 (324-368)||(27718888-27718932)
chr8 (324-368)||(29908034-29908078)
chr8 (320-368)||(33996088-33996136)
chr8 (320-348)||(36018544-36018572)
[»] chr2 (7 HSPs)
chr2 (325-367)||(19159965-19160007)
chr2 (319-368)||(29896288-29896337)
chr2 (331-368)||(34345349-34345386)
chr2 (324-361)||(35194281-35194318)
chr2 (319-359)||(4640649-4640689)
chr2 (324-368)||(9547403-9547447)
chr2 (324-368)||(22267536-22267579)


Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 40039680 - 40039988
Alignment:
Q  19 ctctcataagatagcatgtttgagtccatgtaaacataacttaattgataggataatgcattgtagtatgtatctatgagtacttgtttttacaaattac 118  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  40039680 ctctcataagatagcatgtttgagtctatgtaaatataacttaattgataggataatgcattctagtatgtatttatgagtacttgtttttacaaattac 40039779  T
Q  119 attttgtacaaatatttattgtataatttaagcaatactatcctgaaacaatttttcctgaactatactcgacattaacggtctaaatatttgatttcac 218  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40039780 attttgtacaaatatttattgtagaatttaagcaatgctatcctgaaacaatttttcctgaactatactcgacattaacggtctaaatatttgatttcac 40039879  T
Q  219 accac-aaaactttcagtagttaagaagagaaattatttgtaattgtagaactatctatattcaaaattatttgcatgctactcattagatattggcaat 317  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40039880 accacaaaaactttcagtagttaagaagagaaattatttgtaattgtagaactatctatattcaaaattatatgcatgctactcattagatattggcaat 40039979  T
Q  318 tatagagac 326  Q
    || ||||||    
T  40039980 tacagagac 40039988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 18489115 - 18489069
Alignment:
Q  323 agacaatgcataatatatgcaaggtttagagtttaaactccgaccat 369  Q
    ||||||||||||||||||||||||| | |||||| ||| ||||||||    
T  18489115 agacaatgcataatatatgcaaggtctggagtttgaaccccgaccat 18489069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 10166479 - 10166524
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgaccat 369  Q
    |||| ||||||||||||||||| || ||||||| ||||||||||||    
T  10166479 gacagtgcataatatatgcaagattcagagtttgaactccgaccat 10166524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 15889434 - 15889478
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||    
T  15889434 gacaatgcataatatatgcaaggtctagggttcaaaccccgacca 15889478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 20206534 - 20206582
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||||||||| | ||  ||| ||||||||||||    
T  20206534 tagagacaatgcataatatatgcaagatctaaggttgaaactccgacca 20206582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 35494015 - 35493987
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtt 348  Q
    |||||||||||||||||||||||||||||    
T  35494015 tagagacaatgcataatatatgcaaggtt 35493987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 368
Target Start/End: Original strand, 51241508 - 51241557
Alignment:
Q  319 atagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  51241508 atagagacaatgcataatatatgcaaggttcagggtttagactccgacca 51241557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 359
Target Start/End: Complemental strand, 19020626 - 19020591
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaa 359  Q
    ||||||||||||||||||||||||||||||||||||    
T  19020626 gacaatgcataatatatgcaaggtttagagtttaaa 19020591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 351
Target Start/End: Complemental strand, 1864261 - 1864230
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttag 351  Q
    ||||||||||||||||||||||||||||||||    
T  1864261 tagagacaatgcataatatatgcaaggtttag 1864230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 369
Target Start/End: Original strand, 23334611 - 23334656
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgaccat 369  Q
    |||||||||||| |||||||||||||  |||| |||||||||||||    
T  23334611 gacaatgcataaaatatgcaaggtttgaagttcaaactccgaccat 23334656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 13775653 - 13775625
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtt 348  Q
    |||||||||||||||||||||||||||||    
T  13775653 tagagacaatgcataatatatgcaaggtt 13775625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 347
Target Start/End: Complemental strand, 41142729 - 41142701
Alignment:
Q  319 atagagacaatgcataatatatgcaaggt 347  Q
    |||||||||||||||||||||||||||||    
T  41142729 atagagacaatgcataatatatgcaaggt 41142701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 43356458 - 43356502
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||| ||||||| ||||| |||| |||||||    
T  43356458 gacaatgcataatatatgtaaggtttggagttcaaaccccgacca 43356502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 45140044 - 45140008
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaac 360  Q
    ||||||||||||||||||||||||  |||||||||||    
T  45140044 gacaatgcataatatatgcaaggtccagagtttaaac 45140008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 2402493 - 2402541
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||| || | |||||||||||| |||||    
T  2402493 tagagacaatgcataatatatgcaacgtctggagtttaaactcggacca 2402541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 349
Target Start/End: Original strand, 15913570 - 15913599
Alignment:
Q  320 tagagacaatgcataatatatgcaaggttt 349  Q
    ||||||||||||||||||||||||||||||    
T  15913570 tagagacaatgcataatatatgcaaggttt 15913599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 18023702 - 18023746
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||  || ||| ||||||||||||    
T  18023702 gacaatgcataatatatgcaaggtccagggttcaaactccgacca 18023746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 359
Target Start/End: Original strand, 22600457 - 22600489
Alignment:
Q  327 aatgcataatatatgcaaggtttagagtttaaa 359  Q
    |||||||||||||||||||||| ||||||||||    
T  22600457 aatgcataatatatgcaaggttcagagtttaaa 22600489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 30857271 - 30857307
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaac 360  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  30857271 gacaatgcataatatatgcaaggttttgagttcaaac 30857307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 46849149 - 46849101
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||||| || |||| ||||| |||| |||||||    
T  46849149 tagagacaatgcataatatatgtaaagtttggagttcaaaccccgacca 46849101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 47342472 - 47342428
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||   ||||| ||||||||||||    
T  47342472 gacaatgcataatatatgcaaggtccggagttcaaactccgacca 47342428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 29283834 - 29283882
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||| |||||||||||||||| ||| ||| ||||||||||||    
T  29283834 tagagacaatgtataatatatgcaaggtctagggttcaaactccgacca 29283882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 33542845 - 33542801
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||    
T  33542845 gacaatgcataatatatgcaaggttcatagttcaaactccgacca 33542801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 360
Target Start/End: Original strand, 28951423 - 28951458
Alignment:
Q  325 acaatgcataatatatgcaaggtttagagtttaaac 360  Q
    |||||||||||||||||||||||| |||||||||||    
T  28951423 acaatgcataatatatgcaaggttcagagtttaaac 28951458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 349
Target Start/End: Complemental strand, 331928 - 331899
Alignment:
Q  320 tagagacaatgcataatatatgcaaggttt 349  Q
    ||||||||||||||||||||||||||||||    
T  331928 tagagacaatgcataatatatgcaaggttt 331899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 369
Target Start/End: Complemental strand, 12333606 - 12333561
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgaccat 369  Q
    |||||||||||| |||||||||||  ||||||||||| ||||||||    
T  12333606 gacaatgcataaaatatgcaaggtccagagtttaaaccccgaccat 12333561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 788889 - 788933
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||||||||  ||||| |||| |||||||    
T  788889 gacaatgcataatatatgcaaggttcggagttcaaaccccgacca 788933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 5954630 - 5954674
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttagagtttaaactccg 364  Q
    ||||||||||  |||||||||||||||||| ||||| ||||||||    
T  5954630 tagagacaatatataatatatgcaaggtttggagttcaaactccg 5954674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 12712061 - 12712017
Alignment:
Q  319 atagagacaatgcataatatatgcaaggtttagagtttaaactcc 363  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||    
T  12712061 atagagacaatgcataatatatgcaagatttggagttcaaactcc 12712017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 41520973 - 41521021
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||||||| |  ||| ||||||||||||    
T  41520973 tagagacaatgcataatatatgcaaggttcaaggttcaaactccgacca 41521021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 350
Target Start/End: Original strand, 38934897 - 38934927
Alignment:
Q  320 tagagacaatgcataatatatgcaaggttta 350  Q
    |||||||||||||||||||||||||||||||    
T  38934897 tagagacaatgcataatatatgcaaggttta 38934927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 40160881 - 40160919
Alignment:
Q  330 gcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  40160881 gcataatatatgcaaggtttggagttcaaactccgacca 40160919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 24063251 - 24063210
Alignment:
Q  319 atagagacaatgcataatatatgcaaggtttagagtttaaac 360  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||    
T  24063251 atagagacaatgcataatatatgcaagatttggagttcaaac 24063210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 10148202 - 10148238
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaac 360  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  10148202 gacaatgcataatatatgcaaggttcagagttcaaac 10148238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 19997406 - 19997358
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||| |||  | ||| ||||||||||||    
T  19997406 tagagacaatgcataatatatgcaaagttcggggttcaaactccgacca 19997358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 21318291 - 21318247
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||    
T  21318291 gacaatgcataatatatgcaaggtctagggttcaaaccccgacca 21318247  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 45727512 - 45727556
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  45727512 gacaatgcataatgtatgcaaggtttagggttcaaactccgacca 45727556  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 48234491 - 48234447
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||| ||||| |||||||||| |||||||    
T  48234491 gacaatgcataatatatgcatggtttggagtttaaaccccgacca 48234447  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 349
Target Start/End: Original strand, 2078259 - 2078288
Alignment:
Q  320 tagagacaatgcataatatatgcaaggttt 349  Q
    ||||||||||||||||||||||||||||||    
T  2078259 tagagacaatgcataatatatgcaaggttt 2078288  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 2662114 - 2662155
Alignment:
Q  323 agacaatgcataatatatgcaaggtttagagtttaaactccg 364  Q
    ||||||||||||||||||||||||||   |||||||||||||    
T  2662114 agacaatgcataatatatgcaaggttcgaagtttaaactccg 2662155  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 347
Target Start/End: Original strand, 8075803 - 8075831
Alignment:
Q  319 atagagacaatgcataatatatgcaaggt 347  Q
    |||||||||||||||||||||||||||||    
T  8075803 atagagacaatgcataatatatgcaaggt 8075831  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 10594700 - 10594736
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaac 360  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  10594700 gacaatgcataatatatgcaaggtttagggttcaaac 10594736  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 365
Target Start/End: Complemental strand, 12142037 - 12142001
Alignment:
Q  329 tgcataatatatgcaaggtttagagtttaaactccga 365  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  12142037 tgcataatatatgcaaggttttgagttcaaactccga 12142001  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 14030773 - 14030729
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||| |||||||||||||||||||| ||||| |||| |||||||    
T  14030773 gacaacgcataatatatgcaaggtttggagttcaaaccccgacca 14030729  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 25955331 - 25955287
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||| | ||||||||||| ||||| ||||||||||||    
T  25955331 gacaatgcataaaacatgcaaggtttggagttcaaactccgacca 25955287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 48022356 - 48022308
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||| |||  | ||| ||||||||||||    
T  48022356 tagagacaatgcataatatatgcaaagttcggggttcaaactccgacca 48022308  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 356
Target Start/End: Original strand, 52508287 - 52508319
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagttt 356  Q
    |||||||||||||||||||||||||||| ||||    
T  52508287 gacaatgcataatatatgcaaggtttagggttt 52508319  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 368
Target Start/End: Complemental strand, 3672656 - 3672610
Alignment:
Q  322 gagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||| ||||||||||||||| ||| |||| |||||||    
T  3672656 gagacaatgcataaaatatgcaaggtttagggttcaaaccccgacca 3672610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 8694167 - 8694123
Alignment:
Q  325 acaatgcataatatatgcaaggttt-agagtttaaactccgaccat 369  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  8694167 acaatgcataatatatgcaaggtttgaga-tttaaactccgaccat 8694123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 352
Target Start/End: Complemental strand, 15079190 - 15079162
Alignment:
Q  324 gacaatgcataatatatgcaaggtttaga 352  Q
    |||||||||||||||||||||||||||||    
T  15079190 gacaatgcataatatatgcaaggtttaga 15079162  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 27718932 - 27718888
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||   ||||| ||||||||||||    
T  27718932 gacaatgcataatatatgcaaggtccggagttcaaactccgacca 27718888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 29908034 - 29908078
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||  |||||||||| || |||||    
T  29908034 gacaatgcataatatatgcaaggtccagagtttaaaatctgacca 29908078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 33996088 - 33996136
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||||||||||||||||| |||  | ||| ||||||||||||    
T  33996088 tagagacaatgcataatatatgcaaagttcggggttcaaactccgacca 33996136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 36018572 - 36018544
Alignment:
Q  320 tagagacaatgcataatatatgcaaggtt 348  Q
    |||||||||||||||||||||||||||||    
T  36018572 tagagacaatgcataatatatgcaaggtt 36018544  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 19159965 - 19160007
Alignment:
Q  325 acaatgcataatatatgcaaggtttagagtttaaactccgacc 367  Q
    ||||||||||||||||||||||||  ||||| |||||||||||    
T  19159965 acaatgcataatatatgcaaggttcggagttcaaactccgacc 19160007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 29896337 - 29896288
Alignment:
Q  319 atagagacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||| ||||||||||||||||||||||||| | ||| |||| |||||||    
T  29896337 atagaaacaatgcataatatatgcaaggtttggggttcaaaccccgacca 29896288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 34345386 - 34345349
Alignment:
Q  331 cataatatatgcaaggtttagagtttaaactccgacca 368  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  34345386 cataatatatgtaaggtctagagtttaaactccgacca 34345349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 361
Target Start/End: Complemental strand, 35194318 - 35194281
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaact 361  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  35194318 gacaatgcataatatatgcaaggtttggagttcaaact 35194281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 359
Target Start/End: Complemental strand, 4640689 - 4640649
Alignment:
Q  319 atagagacaatgcataatatatgcaaggtttagagtttaaa 359  Q
    ||||||||| |||||||||||||||||||| ||| ||||||    
T  4640689 atagagacagtgcataatatatgcaaggttcagaatttaaa 4640649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Complemental strand, 9547447 - 9547403
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||||||||| | ||| |||| |||||||    
T  9547447 gacaatgcataatatatgcaaggtttggggttcaaaccccgacca 9547403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 22267536 - 22267579
Alignment:
Q  324 gacaatgcataatatatgcaaggtttagagtttaaactccgacca 368  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||    
T  22267536 gacaatgcataatatatgcaaggttt-gagttcaaaccccgacca 22267579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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