View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14885_low_8 (Length: 423)
Name: NF14885_low_8
Description: NF14885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14885_low_8 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 160 - 423
Target Start/End: Complemental strand, 33513248 - 33512985
Alignment:
| Q |
160 |
accctggtgaacctcgaggataatcctaaaagtaagtacctaaagaaagtgataatggactatacatcaacaaatgattgttgtttattctgagattgtt |
259 |
Q |
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| T |
33513248 |
accctggtgagcctcgaggataagcctaaaagtaagtacctaaagaaagtgaaaatggactatacatcaacaaatgattgttgtttattctgagattgtt |
33513149 |
T |
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| Q |
260 |
gagatcttttttctctattcacaaaccattcagctgttcttcttgcaattggaaaccaaagcttcctccttctttcctctttaagattattttcgacaaa |
359 |
Q |
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| T |
33513148 |
gagatcttttttctctattcacaaaccattcagctgttcttcttgcaattggaaaccaaagcttcctccttctttcctctttaagattattttcgacaaa |
33513049 |
T |
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| Q |
360 |
agaagaatcttcaaacacccttttcttcatgtcaaaatctttaaatctagaaacaccagtgatt |
423 |
Q |
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| T |
33513048 |
agaagaatcttcaaacacccttttcttcatgtcaaaatctttaaatctagaaacaccagtgatt |
33512985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 33513432 - 33513290
Alignment:
| Q |
18 |
cctaccgcatggagtctgagaaggatagatgtacgcaatcttacctcatacctagaaagttggttcagtcgataagaattcaactcaaatcttacaatga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33513432 |
cctaccgcatggagtctgagaaggatagatgtacgcaatcttacctcatacctagaaagttggttcagtcgataagaattcaactcaaatcttacaatga |
33513333 |
T |
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| Q |
118 |
catgagttttaatcccgatgtcaatgtgagaacctcgtttgta |
160 |
Q |
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| T |
33513332 |
aatgagttttaatcccgatgtcaatgtgagaacctcgtttgta |
33513290 |
T |
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