View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14886_high_7 (Length: 207)

Name: NF14886_high_7
Description: NF14886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14886_high_7
NF14886_high_7
[»] chr6 (2 HSPs)
chr6 (18-120)||(6916780-6916882)
chr6 (110-170)||(663897-663957)
[»] chr7 (4 HSPs)
chr7 (111-170)||(38134414-38134473)
chr7 (109-155)||(36314633-36314679)
chr7 (111-162)||(2525852-2525903)
chr7 (111-156)||(20427643-20427688)
[»] chr5 (4 HSPs)
chr5 (109-184)||(38749569-38749644)
chr5 (104-162)||(28296328-28296386)
chr5 (113-162)||(2577190-2577239)
chr5 (116-162)||(42469221-42469267)
[»] chr4 (7 HSPs)
chr4 (111-163)||(18513249-18513301)
chr4 (111-174)||(5654599-5654662)
chr4 (116-175)||(10546135-10546194)
chr4 (111-162)||(14465302-14465353)
chr4 (111-162)||(56049877-56049927)
chr4 (118-184)||(10164441-10164507)
chr4 (110-158)||(20119949-20119997)
[»] chr2 (2 HSPs)
chr2 (111-161)||(18570973-18571023)
chr2 (104-162)||(29970550-29970608)
[»] scaffold0022 (1 HSPs)
scaffold0022 (104-175)||(99880-99951)
[»] chr1 (1 HSPs)
chr1 (109-163)||(42004953-42005007)
[»] chr8 (1 HSPs)
chr8 (111-156)||(35431148-35431193)
[»] chr3 (2 HSPs)
chr3 (111-176)||(20691305-20691370)
chr3 (111-187)||(13799479-13799555)
[»] scaffold0320 (1 HSPs)
scaffold0320 (109-161)||(17042-17094)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 6916780 - 6916882
Alignment:
Q  18 gtgtcaatgtcaatctttgaagcacacatactcctcgaattatgtgtatcccgatgtcagatatgtattgtgtccaacactgaattgacatcaacacata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  6916780 gtgtcaatgtcaatctttgaagcacacatactcctcgaattatgtgtatcccgatgtcagatatgtattgtgtccaacaccgacttgacatcaacacata 6916879  T
Q  118 tga 120  Q
    |||    
T  6916880 tga 6916882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 663897 - 663957
Alignment:
Q  110 aacacatatgattacattaaaatatgccatttactcaaattattatcggtgtctacatgtc 170  Q
    ||||||| || ||||||| ||||||||||| | |||||||||| ||| ||||| |||||||    
T  663897 aacacatgtggttacattgaaatatgccatgttctcaaattatcatcagtgtcaacatgtc 663957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 38134414 - 38134473
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatcggtgtctacatgtc 170  Q
    ||||||||||||||||| || |||| ||||| |||||||||||||||||||| |||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtc 38134473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 36314633 - 36314679
Alignment:
Q  109 caacacatatgattacattaaaatatgccatttactcaaattattat 155  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  36314633 caacacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 2525852 - 2525903
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatcggtgtc 162  Q
    ||||||||||||| ||| || |||| ||||| ||||||||||||||||||||    
T  2525852 acacatatgattatattgaattatgtcatttgctcaaattattatcggtgtc 2525903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 20427643 - 20427688
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatc 156  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||||||    
T  20427643 acacatatgattacatttaaatatgtcatcttctcaaattattatc 20427688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 38749569 - 38749644
Alignment:
Q  109 caacacatatgattacattaaaatatgccatttactcaaattattatcggtgtctacatgtctgtgttagtgcttc 184  Q
    |||||||||| |||||||| || |||| |||||  ||||||||||||||||||| ||||||| ||||| |||||||    
T  38749569 caacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgacatgtccgtgtttgtgcttc 38749644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 28296386 - 28296328
Alignment:
Q  104 gacatcaacacatatgattacattaaaatatgccatttactcaaattattatcggtgtc 162  Q
    |||| |||||||||||| |||||| || |||| ||||| ||||||||||||||||||||    
T  28296386 gacaccaacacatatgagtacattgaattatgtcattttctcaaattattatcggtgtc 28296328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 2577190 - 2577239
Alignment:
Q  113 acatatgattacattaaaatatgccatttactcaaattattatcggtgtc 162  Q
    ||||||||||||| |||| |||| ||||| ||||||||||||||||||||    
T  2577190 acatatgattacactaaattatgtcattttctcaaattattatcggtgtc 2577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 42469267 - 42469221
Alignment:
Q  116 tatgattacattaaaatatgccatttactcaaattattatcggtgtc 162  Q
    |||||||||| ||||||||| ||||| |||||||||||||| |||||    
T  42469267 tatgattacactaaaatatgtcattttctcaaattattatccgtgtc 42469221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 18513249 - 18513301
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatcggtgtct 163  Q
    ||||||||||||||||| || |||| ||||| |||||||||||||||||||||    
T  18513249 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtct 18513301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 5654599 - 5654662
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatcggtgtctacatgtctgtg 174  Q
    |||| |||||||||||| || |||| ||||| |||||||||||||| ||||| |||||||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgtctgtg 5654662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 10546194 - 10546135
Alignment:
Q  116 tatgattacattaaaatatgccatttactcaaattattatcggtgtctacatgtctgtgt 175  Q
    |||||||||||| || |||| ||||| ||||||||||||||  |||| ||||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatcattgtcgacatgtctgtgt 10546135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 14465302 - 14465353
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatcggtgtc 162  Q
    ||||||||||||| ||| || |||| ||||| ||||||||||||||||||||    
T  14465302 acacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 56049927 - 56049877
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatcggtgtc 162  Q
    ||||||||||||||||| || |||| ||||| ||||||||||||||||||||    
T  56049927 acacatatgattacattgaactatgtcattt-ctcaaattattatcggtgtc 56049877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 10164507 - 10164441
Alignment:
Q  118 tgattacattaaaatatgccatttactcaaattattatcggtgtctacatgtctgtgttagtgcttc 184  Q
    |||||||||| || |||||||||| || |||||| || ||||||  ||||||| |||||||||||||    
T  10164507 tgattacattcaattatgccattttcttaaattactaccggtgttgacatgtcagtgttagtgcttc 10164441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 20119997 - 20119949
Alignment:
Q  110 aacacatatgattacattaaaatatgccatttactcaaattattatcgg 158  Q
    ||||||| ||||||||||||| |||  ||||| ||||||||||||||||    
T  20119997 aacacatgtgattacattaaattatttcattttctcaaattattatcgg 20119949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 18571023 - 18570973
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatcggtgt 161  Q
    ||||||||||||||||| || |||| ||||| |||||||||||||||||||    
T  18571023 acacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 29970550 - 29970608
Alignment:
Q  104 gacatcaacacatatgattacattaaaatatgccatttactcaaattattatcggtgtc 162  Q
    |||||| ||||||||||||||| | || ||||| |||| |||||||||||| |||||||    
T  29970550 gacatcgacacatatgattacactgaactatgcgattttctcaaattattagcggtgtc 29970608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 99951 - 99880
Alignment:
Q  104 gacatcaacacatatgattacattaaaatatgccatttactcaaattattatcggtgtctacatgtctgtgt 175  Q
    |||| |||||||||| |||||||| || ||||  |||| || ||||||||||||||||| ||||||| ||||    
T  99951 gacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgacatgtccgtgt 99880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 42004953 - 42005007
Alignment:
Q  109 caacacatatgattacattaaaatatgccatttactcaaattattatcggtgtct 163  Q
    |||||| |||||||||| |||| |||| ||||| |||||||||||||| ||||||    
T  42004953 caacacctatgattacactaaattatgtcattttctcaaattattatccgtgtct 42005007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 35431148 - 35431193
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatc 156  Q
    |||| |||||||||| ||||||||| ||||| ||||||||||||||    
T  35431148 acacctatgattacactaaaatatgtcattttctcaaattattatc 35431193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 20691370 - 20691305
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatcggtgtctacatgtctgtgtt 176  Q
    ||||||||||||||| | || |||| ||||| |||||||||||||| || ||||| |||| |||||    
T  20691370 acacatatgattacactgaattatgtcattttctcaaattattatcagtttctacgtgtcagtgtt 20691305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 13799555 - 13799479
Alignment:
Q  111 acacatatgattacattaaaatatgccatttactcaaattattatcggtgtctacatgtctgtgttagtgcttcgta 187  Q
    |||||||| |||||| | || |||| ||||| |||||| ||||||||||||| || ||||||| |  ||||||||||    
T  13799555 acacatattattacacttaattatgtcattttctcaaactattatcggtgtcaacgtgtctgtatctgtgcttcgta 13799479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 17042 - 17094
Alignment:
Q  109 caacacatatgattacattaaaatatgccatttactcaaattattatcggtgt 161  Q
    |||||||||| |||||||| |  |||||||||| |||||||||||| ||||||    
T  17042 caacacatataattacattgatttatgccattttctcaaattattaacggtgt 17094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University