View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14886_low_2 (Length: 339)
Name: NF14886_low_2
Description: NF14886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14886_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 31335853 - 31336167
Alignment:
| Q |
1 |
gaatttgagctaaaaattgagcttgttaaatataggatctgaaactgtgttattcataattccacttatttgactcatgaattagttgtatctgttatat |
100 |
Q |
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| T |
31335853 |
gaatttgagctaaaaattgagcttgttaaatataggatctgaaactgtgttattcataattccacttatttgactcatgaattagttgtatctgttatat |
31335952 |
T |
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| Q |
101 |
atcaaattattttagaattgtgtagaaattatagatattatctactctatctatctcataataaatgttttatattcaaaaataaataaatgtaagtccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31335953 |
atcaaattattttagaattgtgtagaaattatagatattatcttctctatctatctcataataaatgttttatattcaaaaataaataaatgtaagtccc |
31336052 |
T |
|
| Q |
201 |
aaaataagtgt---tatgacttactgcatgttttttatccgaaagattctagcagtcaaactcacatactaaacgctgataagtgaaaaattgtagattt |
297 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31336053 |
aaaataagtgttactatgacttactgcatgttttttatcagaaagattctagcagccaaactcacatactaaatgctgataagtgaaaaattgtagattt |
31336152 |
T |
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| Q |
298 |
tgcttcaggcatcat |
312 |
Q |
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||||||||||||||| |
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| T |
31336153 |
tgcttcaggcatcat |
31336167 |
T |
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