View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14886_low_3 (Length: 279)
Name: NF14886_low_3
Description: NF14886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14886_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 39561986 - 39561730
Alignment:
| Q |
1 |
tcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttcc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39561986 |
tcacaaaaggcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggataa-------gagcagcttcctggaaagcatttcc |
39561894 |
T |
|
| Q |
101 |
aatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaaccaacacattaaaaatattctttaatctcaatttcatctctctatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39561893 |
aatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaaccaacacattaaaaatattctttaatctcaatttcatctctctatt |
39561794 |
T |
|
| Q |
201 |
ttgagctacaaacataacaagatagattcttactctccattttcaatggatccatcgaaaacac |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39561793 |
ttgagctacaaacataacaagatagattcttactctccattttcaatggatccatcgaaaacac |
39561730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 39566665 - 39566511
Alignment:
| Q |
1 |
tcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttcc |
100 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
39566665 |
tcacaaagagcacaacttagatattggatcaattttatataatacactatgttagtgctcaagaataa-------gagcagcttcctggaaagcatttcc |
39566573 |
T |
|
| Q |
101 |
aatttaccttttccacactatataatgcatcacataca--acaactcaaactcaaaccaaca |
160 |
Q |
| |
|
| ||||| |||| ||||||||||||| ||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
39566572 |
agtttactttttgcacactatataatacatcatatacaacacaactcaaactcaaacaaaca |
39566511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 39572119 - 39572030
Alignment:
| Q |
70 |
ggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaaccaac |
159 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
39572119 |
ggataagagcagcttcctgtaaagcatttccaatttactttttcaacactatataatacatcacctacaacaattcaaactcaaaccaac |
39572030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 39560676 - 39560558
Alignment:
| Q |
1 |
tcacaaaaagcacaactgagatattggatcaattttatactatacactatgttagtgctcaaggataatggataagagcagcttcctggaaagcatttcc |
100 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||| |||| ||||||| || |||| |||||||||||||| |
|
|
| T |
39560676 |
tcacaaaaggcacaactgagatactggatcaattttatacaatatactatgttagtgttcaa-------agataagatcaacttcatggaaagcatttcc |
39560584 |
T |
|
| Q |
101 |
aatttaccttttccacactatataat |
126 |
Q |
| |
|
|||||| |||||||||||| ||||| |
|
|
| T |
39560583 |
tatttactttttccacactacataat |
39560558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 39581181 - 39581249
Alignment:
| Q |
87 |
tggaaagcatttccaatttaccttttccacactatataatgcatcacatacaacaactcaaactcaaac |
155 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
39581181 |
tggaaagcatttccacattactttttccacactatataatgcatcgcatacaacaacttaaactcaaac |
39581249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 39584828 - 39584896
Alignment:
| Q |
88 |
ggaaagcatttccaatttaccttt-tccacactatataatgcatcacatacaacaactcaaactcaaac |
155 |
Q |
| |
|
|||||||||||||||||||| ||| || || ||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
39584828 |
ggaaagcatttccaatttacttttctcaactctatataatacatcactagcaacaactcaaactcaaac |
39584896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University