View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14887_high_2 (Length: 310)
Name: NF14887_high_2
Description: NF14887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14887_high_2 |
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| [»] scaffold0854 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 16975203 - 16975492
Alignment:
| Q |
14 |
caagtagaagggtttgggggctggtgcctgcacaaacttttgagaatttttatttttaatactagtatatatgttgatacattgactaggccacatccac |
113 |
Q |
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| T |
16975203 |
caagtagaagggtttgggggctggtgcctgcacaaacttttgagaatttttatttttaatactagtatatatgttgatacattgactaggccacatccac |
16975302 |
T |
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| Q |
114 |
caatcacacccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtcctcgtggatgttgtttcttcccatatgttccctgtt |
213 |
Q |
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| T |
16975303 |
caatcacacccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtcctcatggatgttgtttcttcccatatgttccctgtt |
16975402 |
T |
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| Q |
214 |
tcctcattatccacttttatcggtatagttaaaactaagaaattaaaaagttaattcttgtcaatgaagtagtatatgtaagtataattt |
303 |
Q |
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| T |
16975403 |
tcctcattatccacttttatcggtgtagttaaaactaagaaattaaaaagttaattcttgtcaatgaagtagtatatgtaagtataattt |
16975492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 25389130 - 25389359
Alignment:
| Q |
14 |
caagtagaagggtttgggggctggtgcctgcacaaacttttgagaatttttatttttaatactagtatatatgttgatacattgactaggccacatccac |
113 |
Q |
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| T |
25389130 |
caagtagaagggtatgggggcaccagcctgcacaaacttttgaga---tttctttttaata---gtatatatgttgatacattgactagaccacatcaac |
25389223 |
T |
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| Q |
114 |
caatcacacccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtcctcgtggatgttgtttcttcccatatgttccctgtt |
213 |
Q |
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| T |
25389224 |
caa----------tagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtt |
25389313 |
T |
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| Q |
214 |
tcctcattatccacttttatcggtatagttaaaactaagaaattaa |
259 |
Q |
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| T |
25389314 |
tcatcattatcaatttttatcgatgtaattaaaactaagaaattaa |
25389359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 39 - 303
Target Start/End: Complemental strand, 663 - 397
Alignment:
| Q |
39 |
gcctgcacaaacttttgagaatttttatttttaatactagtatatatgttgatacattgactaggccacatccaccaatcacacccaatagaaattcaac |
138 |
Q |
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| T |
663 |
gcctacacaaacttttgagaatttttatttttaatactagtatatatgttgatatattgattaggccacatccaccaatcac--ccaatagaaattcaac |
566 |
T |
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| Q |
139 |
aaactaagaagataaagagtttat----ttcctataaaatgtcctcgtggatgttgtttcttcccatatgttccctgtttcctcattatccacttttatc |
234 |
Q |
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| T |
565 |
aaactaagaagataaagagcttatatatttcctataaaatgtcctcatcgatgttgtttcttcccatatgttccatgtttcatcattctccacttttatc |
466 |
T |
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| Q |
235 |
ggtatagttaaaactaagaaattaaaaagttaattcttgtcaatgaagtagtatatgtaagtataattt |
303 |
Q |
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| T |
465 |
ggtgtaattaaaactaagaaattaaaaagctaattcttgtcaatgaagtagtatatgtgagtataattt |
397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 303
Target Start/End: Original strand, 38437633 - 38437909
Alignment:
| Q |
14 |
caagtagaagggtttgggggctggtgcctgcacaaacttttgagaatttttatttttaatactagtatatatgttgatacattgactaggccacatccac |
113 |
Q |
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| T |
38437633 |
caagtagaagggtatgggggcaccagcctgcacaaacttttgaga---tttctttttaata---gtatatatgttgatacattgactagaccacatccac |
38437726 |
T |
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| Q |
114 |
caatcacacccaatagaaattcaacaaactaagaagataaagagtttatttcctataaaatgtcctcgtggatgttgtttcttcccatatgttccctgtt |
213 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
38437727 |
caa----------tagaaattcaacaaactaagaagataaaaagtttatttcctataaaatgtccatatggatcttgtttcttcccatatgttccctgtt |
38437816 |
T |
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| Q |
214 |
tcctcattatccacttttatcggtatagttaaaactaagaaattaaaaagttaattcttgtcaatgaagta---gtatatgtaagtataattt |
303 |
Q |
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| T |
38437817 |
tcatcattatccatttttatcgatgtaattaaaactaagaaattaaaaagttaattcttttcaatgaagtagtggtatatgtgagtataattt |
38437909 |
T |
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