View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14887_low_1 (Length: 388)
Name: NF14887_low_1
Description: NF14887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14887_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 9788977 - 9788617
Alignment:
| Q |
14 |
aaaatattactaaacttatgccaaacctgaatacaattctttccaagcatgaagtcattaaccatagaaccatagatatagcttgcttgccacttgcaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788977 |
aaaatattactaaacttatgccaaacctgaatacaattctttccaagcatgaagtcattaaccatagaaccatagatatagcttgcttgccacttgcaaa |
9788878 |
T |
|
| Q |
114 |
gaaagagctttttagagtaaagtaaggatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788877 |
gaaagagctttttagagtaaagtaaggatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagag |
9788778 |
T |
|
| Q |
214 |
aaaaaatggttttaaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctgg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9788777 |
aaaaaatggttttaaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatttgg |
9788678 |
T |
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| Q |
314 |
atagaattttggttggaatttgtctcctggtttgtggttagagacttgactttgctttctg |
374 |
Q |
| |
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| T |
9788677 |
acagaattttggttggaatttgtctcctggtttgtggttagagacttgactttgctttctg |
9788617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 140 - 374
Target Start/End: Original strand, 3587547 - 3587780
Alignment:
| Q |
140 |
gatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaat-aaaa |
238 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
3587547 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggtttcaaagaaataaaaa |
3587646 |
T |
|
| Q |
239 |
agcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaatttgtct |
338 |
Q |
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| ||||||||||| ||||||||| ||||||| ||||| |||||||||||| | ||||||||||||||||| || | ||||||||||||||||||| | | |
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| T |
3587647 |
accttattcttccttatgtgtgtgtatatat--attaatatgtttgctatagggatagttgtggctctcatttgaacagaattttggttggaatttattt |
3587744 |
T |
|
| Q |
339 |
cctggtttgtggttagagacttgactttgctttctg |
374 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| |
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| T |
3587745 |
cctggtttatggttagagacttgactttgctttctg |
3587780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 141 - 374
Target Start/End: Original strand, 44505350 - 44505583
Alignment:
| Q |
141 |
atttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaataaaaag |
240 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
44505350 |
atttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgttagagaaaaaatggttttaaagaaataaaaac |
44505449 |
T |
|
| Q |
241 |
cttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggttggaatttgtctcc |
340 |
Q |
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||||||||||| ||||||||| | |||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
44505450 |
cttattcttccttatgtgtgtgtgtatatatattaacatgtttgctatatggatagttgtggctctcatctggacagaattttggttagaatttgtctcc |
44505549 |
T |
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| Q |
341 |
tggtttgtggttagagacttgactttgctttctg |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
44505550 |
tggtttgtggttagagacttgactttgctttctg |
44505583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 227 - 374
Target Start/End: Complemental strand, 10013631 - 10013484
Alignment:
| Q |
227 |
aaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggt |
326 |
Q |
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|
||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||| |
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| T |
10013631 |
aaagaaataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggt |
10013532 |
T |
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| Q |
327 |
tggaatttgtctcctggtttgtggttagagacttgactttgctttctg |
374 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10013531 |
tggaatttgtctcctggtttgtagttagagacttgactttgctttctg |
10013484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 227 - 374
Target Start/End: Complemental strand, 10020772 - 10020625
Alignment:
| Q |
227 |
aaagaaataaaaagcttattcttccctatgtgtgtatatatatacattaacatgtttgctatatgcatagttgtggctctcatctggatagaattttggt |
326 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||| |||||||| ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||||| |
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| T |
10020772 |
aaagaaataaaaatcttattcttccttatgtatgtgtatatatatattaacatgtttgctattgggataattgtggctctcatttggacagaattttggt |
10020673 |
T |
|
| Q |
327 |
tggaatttgtctcctggtttgtggttagagacttgactttgctttctg |
374 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10020672 |
tggaatttgtctcctggtttgtagttagagacttgactttgctttctg |
10020625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 10013746 - 10013647
Alignment:
| Q |
140 |
gatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
239 |
Q |
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|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10013746 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10013647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 10020887 - 10020788
Alignment:
| Q |
140 |
gatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
239 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10020887 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10020788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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