View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14887_low_3 (Length: 254)
Name: NF14887_low_3
Description: NF14887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14887_low_3 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 30072853 - 30072892
Alignment:
| Q |
215 |
ataaatagaaatgcatgaatggtatatattggtgagaaag |
254 |
Q |
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| T |
30072853 |
ataaatagaaatgcatgaatggtatatattggtgagaaag |
30072892 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 30458912 - 30458868
Alignment:
| Q |
210 |
aaaatataaatagaaatgcatgaatggtatatattggtgagaaag |
254 |
Q |
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| T |
30458912 |
aaaatataaatagaaatgtatgcatggtatatattggtaagaaag |
30458868 |
T |
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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 2806107 - 2806069
Alignment:
| Q |
126 |
atggtataaacatgtgtttataaatgggggtaatcctat |
164 |
Q |
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| T |
2806107 |
atggtctaaacatgtgtttataaatgagggtaatcctat |
2806069 |
T |
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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 30049981 - 30050022
Alignment:
| Q |
215 |
ataaatagaaatgcatgaatgg--tatatattggtgagaaag |
254 |
Q |
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| T |
30049981 |
ataaatagaaatgcatgaatggtatatatattggtgagaaag |
30050022 |
T |
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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 30049937 - 30049973
Alignment:
| Q |
53 |
tagttgagagttgattctgattaatttgtcatgattt |
89 |
Q |
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| T |
30049937 |
tagttgagagttgattctgataaatttctcatgattt |
30049973 |
T |
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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 30458954 - 30458906
Alignment:
| Q |
50 |
ctatagttgagagttgattctgattaatttgtcatgattttgaaaatat |
98 |
Q |
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| T |
30458954 |
ctatatttgagagtagattctgattaatttctcataatttcgaaaatat |
30458906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 52907370 - 52907414
Alignment:
| Q |
118 |
gataaaatatggtataaacatgtgtttataaatgggggtaatcct |
162 |
Q |
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| T |
52907370 |
gataaaatatggtttgaacatgtgtttataagtgggggcaatcct |
52907414 |
T |
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