View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14888_low_1 (Length: 429)

Name: NF14888_low_1
Description: NF14888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14888_low_1
NF14888_low_1
[»] chr8 (5 HSPs)
chr8 (71-411)||(5879332-5879679)
chr8 (21-73)||(5879129-5879181)
chr8 (45-102)||(2598298-2598356)
chr8 (39-68)||(3117178-3117207)
chr8 (34-70)||(8740907-8740943)
[»] chr5 (4 HSPs)
chr5 (20-69)||(5731705-5731754)
chr5 (22-70)||(33537495-33537543)
chr5 (20-67)||(39213276-39213323)
chr5 (34-87)||(28225146-28225199)
[»] chr4 (3 HSPs)
chr4 (20-112)||(17121129-17121222)
chr4 (20-95)||(11025036-11025112)
chr4 (20-71)||(23915572-23915623)
[»] chr7 (2 HSPs)
chr7 (20-70)||(7929989-7930039)
chr7 (38-67)||(29121442-29121471)
[»] chr3 (1 HSPs)
chr3 (20-70)||(54225972-54226022)
[»] chr2 (3 HSPs)
chr2 (20-82)||(23492789-23492849)
chr2 (21-70)||(15873573-15873622)
chr2 (45-113)||(42363890-42363958)
[»] chr1 (1 HSPs)
chr1 (38-71)||(44122156-44122189)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 71 - 411
Target Start/End: Original strand, 5879332 - 5879679
Alignment:
Q  71 agaattagaaaaaatgacacctattctaagacaaagtgagtataaggcacccctttttgcttagttagatcaccccatttcgagtctctcaaatctttgg 170  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  5879332 agaattagaaaaaatgacacctattctaagacaaagggagtataaggcacccctttttgcttagttagatcaccccatttcgagtctctcaaatcttt-- 5879429  T
Q  171 aattattgtatgctaaataagagttaggtctttttgatgttttttacaccaagaagacgatgataaatggtctagaa---tgactacaatttctaggtaa 267  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  5879430 cattattgtatgctaaataagagttaggtctttttgatgttttttacaccaagaagacgatgataaatggtctagaagagtgactacaatttctaggtaa 5879529  T
Q  268 aattacacccgtttcaatcaacgtaaaaatcgaataccaaaccttacagacaaagctagctacctacaaa--atgtgtttttccacctctagagtctttg 365  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  5879530 aattacacctgtttc-atcaacgtaaaaatcgaataccaaaccttacagacaaagctagctacctacaaaatatgtgtttttccacctctagagtctttg 5879628  T
Q  366 ggg-----gacacaatccgagtaacccagttccaatctcataacccttcta 411  Q
    |||      ||||||||||||||||||||||||||||||||||||||||||    
T  5879629 gggcaccacacacaatccgagtaacccagttccaatctcataacccttcta 5879679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 5879129 - 5879181
Alignment:
Q  21 taataaatattacattggtattgtaaaagggacaaataatttgagacaaaaga 73  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  5879129 taataaatattatattggtattataaaagggacaaataatttgagacaaaaga 5879181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 2598356 - 2598298
Alignment:
Q  45 aaaagggacaaataatttgagacaa-aagaattagaaaaaatgacacctattctaagac 102  Q
    |||| |||||||||||||||||||| || |||||||||| || ||||||||| ||||||    
T  2598356 aaaaaggacaaataatttgagacaacaaaaattagaaaagataacacctattgtaagac 2598298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 3117178 - 3117207
Alignment:
Q  39 tattgtaaaagggacaaataatttgagaca 68  Q
    ||||||||||||||||||||||||||||||    
T  3117178 tattgtaaaagggacaaataatttgagaca 3117207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 8740943 - 8740907
Alignment:
Q  34 attggtattgtaaaagggacaaataatttgagacaaa 70  Q
    |||| |||||||||||||||||||||||| |||||||    
T  8740943 attgatattgtaaaagggacaaataattttagacaaa 8740907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 5731754 - 5731705
Alignment:
Q  20 ataataaatattacattggtattgtaaaagggacaaataatttgagacaa 69  Q
    ||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  5731754 ataataaatattgtattgatattgtaaaagggacaaataatttgagacaa 5731705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 33537543 - 33537495
Alignment:
Q  22 aataaatattacattggtattgtaaaagggacaaataatttgagacaaa 70  Q
    ||||||| ||| ||||||||| |||||| ||||||||||||||||||||    
T  33537543 aataaatgttatattggtattataaaagagacaaataatttgagacaaa 33537495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 39213323 - 39213276
Alignment:
Q  20 ataataaatattacattggtattgtaaaagggacaaataatttgagac 67  Q
    ||||||||| ||  ||||||||| ||||||||||||||||||||||||    
T  39213323 ataataaatgttgtattggtattataaaagggacaaataatttgagac 39213276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 28225146 - 28225199
Alignment:
Q  34 attggtattgtaaaagggacaaataatttgagacaaaagaattagaaaaaatga 87  Q
    |||| ||||||||||| ||||||||||||||||||||  ||||| |||| ||||    
T  28225146 attgttattgtaaaagagacaaataatttgagacaaataaattataaaagatga 28225199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 17121222 - 17121129
Alignment:
Q  20 ataataaatattacattggtattgtaaaagggacaaataatttgagacaaa-agaattagaaaaaatgacacctattctaagacaaagtgagta 112  Q
    ||||||||| || |||||||||||||||||||||||||||| || |||||| | || ||| ||||| |||||| ||| | |||||||| |||||    
T  17121222 ataataaatgttgcattggtattgtaaaagggacaaataatatgtgacaaagaaaaatagtaaaaaagacaccaattttgagacaaagggagta 17121129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 11025036 - 11025112
Alignment:
Q  20 ataataaatattacattggtattgtaaaagggacaaataatttgagacaaa-agaattagaaaaaatgacacctatt 95  Q
    ||||||||| ||| |||| ||||||| |||| ||||||||||||||||||| | ||||| |||| ||||||| ||||    
T  11025036 ataataaatgttatattgatattgtagaaggaacaaataatttgagacaaagaaaattataaaagatgacacatatt 11025112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 23915572 - 23915623
Alignment:
Q  20 ataataaatattacattggtattgtaaaagggacaaataatttgagacaaaa 71  Q
    ||||||||| ||  ||||||||||||||||||||||||| ||| ||||||||    
T  23915572 ataataaatgttgtattggtattgtaaaagggacaaatattttaagacaaaa 23915623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 7930039 - 7929989
Alignment:
Q  20 ataataaatattacattggtattgtaaaagggacaaataatttgagacaaa 70  Q
    ||||||||| ||  ||| |||||||||||||||||||||| ||||||||||    
T  7930039 ataataaatgttgtattagtattgtaaaagggacaaataaattgagacaaa 7929989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 67
Target Start/End: Complemental strand, 29121471 - 29121442
Alignment:
Q  38 gtattgtaaaagggacaaataatttgagac 67  Q
    ||||||||||||||||||||||||||||||    
T  29121471 gtattgtaaaagggacaaataatttgagac 29121442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 54225972 - 54226022
Alignment:
Q  20 ataataaatattacattggtattgtaaaagggacaaataatttgagacaaa 70  Q
    ||||||||| ||  |||||||||||||||||||||| ||||| ||||||||    
T  54225972 ataataaatgttgtattggtattgtaaaagggacaagtaattcgagacaaa 54226022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 23492849 - 23492789
Alignment:
Q  20 ataataaatattacattggtattgtaaaagggacaaataatttgagacaaaagaattagaaaa 82  Q
    ||||||||| ||  ||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  23492849 ataataaatgttgtatttgtattgtaaaagg-acaaataatttgagacaaaa-aattagaaaa 23492789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 15873622 - 15873573
Alignment:
Q  21 taataaatattacattggtattgtaaaagggacaaataatttgagacaaa 70  Q
    |||||||| ||  |||| |||| |||||||||||||||||||||||||||    
T  15873622 taataaatgttgtattgatattataaaagggacaaataatttgagacaaa 15873573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 42363890 - 42363958
Alignment:
Q  45 aaaagggacaaataatttgagacaaaagaattagaaaaaatgacacctattctaagacaaagtgagtat 113  Q
    |||| |||||||||||||||||||||  || |||  || |||||||||||| |||||| ||| ||||||    
T  42363890 aaaatggacaaataatttgagacaaagaaagtagttaagatgacacctattataagacgaagggagtat 42363958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 44122189 - 44122156
Alignment:
Q  38 gtattgtaaaagggacaaataatttgagacaaaa 71  Q
    ||||| ||||||||||||||||||||||||||||    
T  44122189 gtattataaaagggacaaataatttgagacaaaa 44122156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University