View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14888_low_5 (Length: 229)
Name: NF14888_low_5
Description: NF14888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14888_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 31668972 - 31668757
Alignment:
| Q |
1 |
gtctcactctaaccatgcagtacttggcaggtgcatatcagcggtggttgcttgaattgagtttgtgaggttggaacgtgaacatcagcatcgacagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31668972 |
gtctcactctaaccatgcagtacttggcaggtgcatatcagcggtgattgcttgaattgagtttgtgaggttggaacgtgaacatcagcatcgacagtct |
31668873 |
T |
|
| Q |
101 |
ttaagcaatgggcatgccagcgagagaatggatcctgaattatcaggtcatatgtcagctgaagcaagcatcaactccacgctgcagttatttgtgaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31668872 |
ttaagcaatgggcatgccagcgagagaatggatcctgaattatcaggtcatatgtcagctgaagcaagcatcaactccacgctgaagttatttgtgaaac |
31668773 |
T |
|
| Q |
201 |
tctctgcagagatgat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31668772 |
tctctgcagagatgat |
31668757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 31685904 - 31685689
Alignment:
| Q |
1 |
gtctcactctaaccatgcagtacttggcaggtgcatatcagcggtggttgcttgaattgagtttgtgaggttggaacgtgaacatcagcatcgacagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31685904 |
gtctcactctaaccatgcagtacttggcaggtgcatatcagcggtgattgcttgcattgagtttgtgaggttggaacatgaacatcagcatcgacagtct |
31685805 |
T |
|
| Q |
101 |
ttaagcaatgggcatgccagcgagagaatggatcctgaattatcaggtcatatgtcagctgaagcaagcatcaactccacgctgcagttatttgtgaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31685804 |
ttaagcaatgggcatgccagcgagagaatggatcctgaattatcaggtcatatgtcagctgaagcaagcatcaactccacgctgcagttatttgtgaaac |
31685705 |
T |
|
| Q |
201 |
tctctgcagagatgat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31685704 |
tctctgcagagatgat |
31685689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 32795310 - 32795525
Alignment:
| Q |
1 |
gtctcactctaaccatgcagtacttggcaggtgcatatcagcggtggttgcttgaattgagtttgtgaggttggaacgtgaacatcagcatcgacagtct |
100 |
Q |
| |
|
||||||||||||||||| | |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32795310 |
gtctcactctaaccatgtaatactgggcaggtgcatatcagcggtggttgctggaagtgagtttgtgaggttggaacgtgaacaccagcatcgacagtct |
32795409 |
T |
|
| Q |
101 |
ttaagcaatgggcatgccagcgagagaatggatcctgaattatcaggtcatatgtcagctgaagcaagcatcaactccacgctgcagttatttgtgaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32795410 |
ttaagcaatgggcatgccagcgagggaatggatcctgaattatcgggtcatatgtcagctgaagcaagcatcaactccacgctgcagttatttgtgaaac |
32795509 |
T |
|
| Q |
201 |
tctctgcagagatgat |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32795510 |
tctctgcagagatgat |
32795525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University