View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14889_high_7 (Length: 267)
Name: NF14889_high_7
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14889_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 27506278 - 27506539
Alignment:
| Q |
1 |
tgataatgaagaagacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttgaaagggtggtgtaca |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27506278 |
tgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttgaaagggtggtgtaca |
27506377 |
T |
|
| Q |
101 |
atctttagacaacccacatgctatatcatcttatcctttaactctttcaaacaataatttagcttggaattaggtttgcaaagaatattagtaactataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27506378 |
atctttagacaacccacatgctatatcatcttatcctttaattctttcaaacaataatttatcttggaattaggtttgcaaagaatattagtaactataa |
27506477 |
T |
|
| Q |
201 |
atatacttacaaataggcgtcaaacacaacacaagtcattggtatcctaaagtattagttag |
262 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27506478 |
atatacttacaaataggcatcaaacacaacacaagtcattggtatcctaaagtattagttag |
27506539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 27486504 - 27486244
Alignment:
| Q |
3 |
ataatgaagaagacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttgaaagggtggtg-tacaa |
101 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| || || |
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| T |
27486504 |
ataatgaagaaaacatgtctgaaacatgtttacacaattatgaagtgatagttaatggatgaaaaaatatgaggttgaatttgaaagggtggtggtataa |
27486405 |
T |
|
| Q |
102 |
tctttagacaac-ccacatgctatatcatcttatcctttaactctttcaaacaataatttagcttggaattaggtttgcaaagaatattagtaactataa |
200 |
Q |
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| |||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
27486404 |
tgtttagacaacaccacatggtatatcatcttatcctttaactctttcaagaaataatttagcttggaattaggtttgcaaagaatctcagtaactataa |
27486305 |
T |
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| Q |
201 |
atatacttacaaataggcgtcaaacacaacacaagtcattggtatcctaaagtattagtta |
261 |
Q |
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|||||||||||||| ||| |||||||||||||||||| ||| ||||| |||||||||||| |
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| T |
27486304 |
atatacttacaaattggcttcaaacacaacacaagtcgttgacatcctcaagtattagtta |
27486244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 27479446 - 27479184
Alignment:
| Q |
1 |
tgataatgaagaagacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttgaaagggtggtg-tac |
99 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||| |
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| T |
27479446 |
tgataatgaagaaaacatgtctgaaacatgtttacacaattatgaagtgatagttaatagatgataaaatatgaggttgaacttgaaagggtggtggtac |
27479347 |
T |
|
| Q |
100 |
aatctttagacaac-ccacatgctatatcatcttatcctttaactctttcaaacaataatttagcttggaattaggtttgcaaagaatattagtaactat |
198 |
Q |
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||| |||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
27479346 |
aatgtttagacaacaccacatggtatatcatcttatcctttaactctttcaagaaataatttagcttggaattaggtttgcaaagaatctcagtaactat |
27479247 |
T |
|
| Q |
199 |
aaatatacttacaaataggcgtcaaacacaacacaagtcattggtatcctaaagtattagtta |
261 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| ||| ||||| |||||||||||| |
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| T |
27479246 |
aaatatacttacaaattggcttcaaacacaacacaagtcgttgacatcctcaagtattagtta |
27479184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 27500939 - 27501137
Alignment:
| Q |
15 |
acatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttgaatttgaaagggtggtgtacaatctttagacaac- |
113 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||| | |||||||||||||||||| | ||||| | |||||||||||| |||||||||| | ||||| |
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| T |
27500939 |
acatgtctgaaacatgcttacacaattatgaagtacttcttaatgcatgaacaaataagtggttgcagttgaaagggtggggtacaatcttaaaacaaca |
27501038 |
T |
|
| Q |
114 |
ccacatgctatatcatcttatcctttaactctttcaaacaataatttagcttggaattaggtttgcaaagaatattagtaactataaatatacttacaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| | | |||||||||||||||| |||| |
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| T |
27501039 |
ccacatgctatatcatcttatcctttaactctttcaaacaataatttagcttgtaattgggtttccaaagaacctcaataactataaatatactaacaa |
27501137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 27526881 - 27526958
Alignment:
| Q |
135 |
cctttaactctttcaaacaataatttagcttggaattaggtttgcaaagaatattagtaactataaatatacttacaa |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| || |||| | ||||||||||||||||||||||| |
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| T |
27526881 |
cctttaactcttttaaacaataatttagcttggaattaggtttccagagaacctcagtaactataaatatacttacaa |
27526958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 27468943 - 27468898
Alignment:
| Q |
3 |
ataatgaagaagacatgtctgaaacatgtttacaaaattatgaagt |
48 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
27468943 |
ataatgaagaaaacatgtctgaagcatgtttacaaaattatgaagt |
27468898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 27489645 - 27489721
Alignment:
| Q |
3 |
ataatgaagaagacatgtctgaaacatgtttacaaaattatgaagtgatagttaatgcatgaacaaatatgaggttg |
79 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||| |||| | |||||||||||| ||||||||||||| |
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| T |
27489645 |
ataatgaagaaaacatgtctaaagcatgtttacaaaattacaaagtaccaattaatgcatgaataaatatgaggttg |
27489721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 27503459 - 27503499
Alignment:
| Q |
3 |
ataatgaagaagacatgtctgaaacatgtttacaaaattat |
43 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
27503459 |
ataatgaagaaaacatgtctgaagcatgtttacaaaattat |
27503499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 27524058 - 27524102
Alignment:
| Q |
3 |
ataatgaagaagacatgtctgaaacatgtttacaaaattatgaag |
47 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||||||||| |
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|
| T |
27524058 |
ataatgaagaaaacatgtctgaagcatgtttacgaaattatgaag |
27524102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 27557004 - 27556962
Alignment:
| Q |
3 |
ataatgaagaagacatgtctgaaacatgtttacaaaattatga |
45 |
Q |
| |
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||||||||||| |||||||| || ||||||||||||||||||| |
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| T |
27557004 |
ataatgaagaaaacatgtctaaagcatgtttacaaaattatga |
27556962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 27514427 - 27514472
Alignment:
| Q |
3 |
ataatgaagaagacatgtctgaaacatgtttacaaaattatgaagt |
48 |
Q |
| |
|
|||||| |||| |||||||| || |||||||||||||||||||||| |
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|
| T |
27514427 |
ataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagt |
27514472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 27476173 - 27476133
Alignment:
| Q |
3 |
ataatgaagaagacatgtctgaaacatgtttacaaaattat |
43 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||||||||| |
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|
| T |
27476173 |
ataatgaagaaaacatgtctgaagcatgcttacaaaattat |
27476133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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