View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14889_high_8 (Length: 236)

Name: NF14889_high_8
Description: NF14889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14889_high_8
NF14889_high_8
[»] chr4 (17 HSPs)
chr4 (9-218)||(27514395-27514604)
chr4 (7-221)||(27524023-27524245)
chr4 (9-218)||(27468757-27468975)
chr4 (7-218)||(27503427-27503644)
chr4 (12-217)||(27475993-27476204)
chr4 (9-106)||(27508488-27508585)
chr4 (142-218)||(27508410-27508486)
chr4 (144-215)||(27556962-27557033)
chr4 (106-215)||(27489616-27489723)
chr4 (141-206)||(27506260-27506325)
chr4 (141-206)||(27479399-27479464)
chr4 (151-215)||(27497858-27497922)
chr4 (141-203)||(27486459-27486521)
chr4 (139-196)||(27526689-27526747)
chr4 (139-213)||(27554101-27554174)
chr4 (143-210)||(27431871-27431937)
chr4 (22-103)||(27517369-27517451)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 27514604 - 27514395
Alignment:
Q  9 catagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagatgtg 107  Q
    ||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  27514604 catagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgt- 27514506  T
Q  108 caacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctg 207  Q
    || |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||     
T  27514505 cagcctcatatttcttcatgatttaattggtgtacttcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtccagcta 27514406  T
Q  208 gtaagtgacta 218  Q
    |||||||||||    
T  27514405 gtaagtgacta 27514395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 27524245 - 27524023
Alignment:
Q  7 atcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagat-- 104  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||      
T  27524245 atcatagggataaggtagcatgtggtgttgtcttagagtgtaccctaccttcttaaacaatatccaatacaaagcttccaattgctaccaaatgagatgt 27524146  T
Q  105 ------gtgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgat 198  Q
          ||||||| |||||||| || |||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27524145 gctcaagtgcaacgtcatatttcttcatgatttaattggtttccttcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgat 27524046  T
Q  199 gtccagctggtaagtgactacat 221  Q
    |||||||||||||||| ||||||    
T  27524045 gtccagctggtaagtgtctacat 27524023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 27468757 - 27468975
Alignment:
Q  9 catagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaa-tgtccaatacaaagcttccacttgctaccaaatgagatgtg 107  Q
    ||||||||||||||  |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27468757 catagggataaggtctcatgtggtgttgtctaagagtgtaccctaccttcttaaacaaatgtccaatacaaagcttccacttgctaccaaatgagatgtg 27468856  T
Q  108 c--------aacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatg 199  Q
    |        | |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27468857 ctcaagtgcagcctcatatttcttcatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatg 27468956  T
Q  200 tccagctggtaagtgacta 218  Q
    |  ||||||||||||||||    
T  27468957 tgaagctggtaagtgacta 27468975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 27503644 - 27503427
Alignment:
Q  7 atcatagggataaggtagcatgtggtgttgtcttcgagtgtaccctacc-ttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatg 105  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||||||||||  |||| |||||    
T  27503644 atcatagggataatgtagcatgtggtgttgtcttagagtgtcccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatg 27503545  T
Q  106 tg--caa------cctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctga 197  Q
    ||  |||      ||||||||||||| ||||||||||| | |   |  |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27503544 tgatcaagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaaacatgcttcagacatgttttcttcattatgataatgttga 27503448  T
Q  198 tgtccagctggtaagtgacta 218  Q
    |||||||||| ||||||||||    
T  27503447 tgtccagctgataagtgacta 27503427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 27475993 - 27476204
Alignment:
Q  12 agggataaggtagcatgtggtgttgtcttcgagtgtaccctacc-ttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgtg--c 108  Q
    ||||||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||  |||| |||||||  |    
T  27475993 agggataaggtagcatggggtgttgtcttagagtgtaccctacctttcctaaacaatgtccaatacaaagcttccacttgctaaaaaataagatgtgatc 27476092  T
Q  109 aa------cctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcc 202  Q
    ||      ||||||||||||| ||||||||||| | |   |  |||||||||||| |||||||||||||||||||||||||||||||||||| |||||      
T  27476093 aagtatagcctcatatttgttcatgatttaattagcg---tcaataattttgtaagcatgcttcagacatgttttcttcattatgataatgccgatgtga 27476189  T
Q  203 agctggtaagtgact 217  Q
    |||||||| ||||||    
T  27476190 agctggtatgtgact 27476204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 27508585 - 27508488
Alignment:
Q  9 catagggataaggtagcatgtggtgttgtcttcgagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgagatgt 106  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27508585 catagtgataaggtagcatgtggtgctgtcttagagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttcctaccaaatgagatgt 27508488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 27508486 - 27508410
Alignment:
Q  142 cttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtgacta 218  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  27508486 cttcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctagtaagtgacta 27508410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 27556962 - 27557033
Alignment:
Q  144 tcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtga 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||||||||||||||    
T  27556962 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttccagctggtaagtga 27557033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 27489723 - 27489616
Alignment:
Q  106 tgcaacctcatatttgttgatgatttaattggtgtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagc 205  Q
    ||||||||||||||| || |||  |||||||||  ||||  ||||||||||||||||||| |||||||||||||||||||||| ||||  ||||||||||    
T  27489723 tgcaacctcatatttattcatgcattaattggt--actttgtaattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtccagc 27489626  T
Q  206 tggtaagtga 215  Q
    |||| |||||    
T  27489625 tggttagtga 27489616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 27506325 - 27506260
Alignment:
Q  141 acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagct 206  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||||||    
T  27506325 acttcataattttgtaaacatgtttcagacatgttttcttcattatcaaagtgctgatgtccagct 27506260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 27479399 - 27479464
Alignment:
Q  141 acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagct 206  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  27479399 acttcataattgtgtaaacatgtttcagacatgttttcttcattatcatggtgctgatgtccagct 27479464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 27497858 - 27497922
Alignment:
Q  151 tttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtga 215  Q
    |||||||||| ||||  |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  27497858 tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtctagctggtaagtga 27497922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 27486459 - 27486521
Alignment:
Q  141 acttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtcca 203  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| | | || |||||||||    
T  27486459 acttcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgatgtcca 27486521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 27526747 - 27526689
Alignment:
Q  139 gtacttcataattttgtaaacatgcttcagacatg-ttttcttcattatgataatgctg 196  Q
    |||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||||    
T  27526747 gtacttcataattttgaaaacattgttcagacatgtttttcttcattatgataatgctg 27526689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 27554101 - 27554174
Alignment:
Q  139 gtacttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagt 213  Q
    |||||||||||||||| |||||||  | |||||||||| ||||||| |||||||| |||| ||||||||||||||    
T  27554101 gtacttcataattttgcaaacatgtctaagacatgttt-cttcattttgataatgttgatctccagctggtaagt 27554174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 27431937 - 27431871
Alignment:
Q  143 ttcataattttgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggta 210  Q
    ||||||||||||||||||||| | | |||||||| ||||||  |||||||| ||||||||||||||||    
T  27431937 ttcataattttgtaaacatgcattatacatgttt-cttcatcttgataatgttgatgtccagctggta 27431871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 27517451 - 27517369
Alignment:
Q  22 tagcatgtggtgttgtcttc-gagtgtaccctaccttcttaaacaatgtccaatacaaagcttccacttgctaccaaatgaga 103  Q
    |||||||||| ||||||||  || ||||||| ||||||| |||||||| |||| ||||||||||||||||  ||||| |||||    
T  27517451 tagcatgtggcgttgtcttaagattgtaccccaccttctcaaacaatggccaacacaaagcttccacttggaaccaattgaga 27517369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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